Panicum virgatum (switchgrass): 120647152
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Entry
120647152 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120647152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120647152
03036 Chromosome and associated proteins [BR:
pvir03036
]
120647152
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120647152
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120647152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
120647152
NCBI-ProteinID:
XP_039779735
LinkDB
All DBs
Position
9K:complement(65929072..65934102)
Genome browser
AA seq
1013 aa
AA seq
DB search
MAAGTVFPVLRSSEYFTRPSINDLVEREVADPGYCSRVPNFVIGRTGYGQVRFLRNTDVR
GIDLNDIVRFDKHSVVVYEDETCKPPVGLGLNKAAEVSLLLNLKDLPEPSILVEVLKCRA
RKQGARFLSFNPVNGKWKFEVDHFSRFGLVDEEEEDVLMDEAAVRQPIAELRERDPPSNG
YEIELSHSLPAHLGLDPAKMQEMRMAMFYNEEDDEYMEDGFPSDERYLSRERMNVDSPTS
SSGKGPKLRSVSPLHMSSQKAGRRSGMPSRKEPHTLLEYSVNFSELVPSTRGMLMSGQNK
GFPVKMTKVEGFKLPAEQETPVAGKMYANCVVDAALFMGRSFRVGWGPNGMLVHSGSLVN
SPGTGLSSVIHIEKVASDKVVRDDKNKIKEDLEELVFSDPMDLHKSLDHEFLETESDSFR
LKLQKVVANRLVLPDICRSYIDIIERQLEVSDLSMSSRVLLMHQVTVWELIRVLFSERAN
GNQLEPIGDDDQEGMVLDKKEGSVNIDLDALPLVRRADFSNWLQDSVCHRVQGEVGSLSD
ARYLEHILLLLTGRQLDSATEVAASRGDVRLAVLLSQAGGSMTNRSDLSQQLDLWKMNGL
DFNYIEEDRLKVYELLAGNIQAAFQDSSIDWKRYLGLIMWYQLQPDTSLDVIIRFYDHLL
SKGKVPYPVPVYIDEGPLDEALKWSPGDRFDISFYLMLLHASQDEKFGLLKTMFSAFSSS
YDPLDYHMIWHQRSILEAIGAFNSNDLHLLDLSFVYQLLCLGKCHWAIYVILHMPYLDDA
PYIHEKLIREVLSQYCELWSKDDAQRQCIVELGIPEEWIYEALALYHEYYGDQQGALENF
IRCGNWKKAHTIFMTSIAHTMFLSSNHQEIWEITSALENHKSEIADWDLGAGIYIDFYIL
KNSMQEESAMDDSRYFIFQDSLLKKNESCKSFFGRLNDSLLVWGSKLPVESRACYSKMTD
ELCELFMKAPGVAMNLHMECFQTMLNAPVADDRKSSYLQEAVSVFTEILCSDS
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggctgccggcactgtgttccctgtgctgcgctcctcggagtacttcacaaggccgtcg
atcaatgatctggttgagcgggaggtggctgatcctggctactgcagcagggttccgaac
ttcgtcatcgggaggactggatatgggcaggttaggttcctgcgaaacaccgatgtgagg
gggattgacctgaatgatatcgtcaggtttgataaacattctgtggtggtttatgaggat
gaaacttgtaaacctcctgtagggcttggtcttaataaagcagcggaagtgtcattgctg
ctgaatctaaaggaccttccggagcccagtatccttgttgaagtgctaaagtgtcgtgca
agaaagcaaggtgctaggttcctttcgttcaatccagtgaatggtaaatggaaatttgag
gttgatcattttagtagatttgggcttgtggatgaggaggaagaagatgttctgatggat
gaggcagctgttcggcagccaattgccgaactaagagaaagagacccaccttcaaatggt
tatgaaattgagctttcgcattcattgcctgctcatcttgggcttgaccctgcaaagatg
caagaaatgaggatggctatgttttacaatgaggaagatgatgaatatatggaggatggg
ttcccatctgatgagaggtaccttagcagagaaaggatgaatgtggattcgcccacttca
tcaagtggtaaaggtccaaagttaaggtctgtctcacccttgcacatgtcttctcaaaag
gctggcaggagatctggtatgccttctcggaaagaaccacacacactattggaatacagt
gtgaatttttcagagcttgttccatcgactcgaggcatgctaatgtctgggcaaaacaaa
ggatttccagtgaaaatgaccaaggttgaaggctttaagctgccagctgagcaagaaact
cctgttgctggaaaaatgtatgctaattgtgtagtggatgctgctttattcatgggtagg
tcatttcgtgttggttggggaccaaacggtatgcttgttcattcaggtagtctggtaaat
agtccaggaactggcctatcttctgttattcacatagagaaagttgcaagcgacaaagtt
gtgcgtgatgataagaacaagattaaggaggacctagaagaactagttttttctgatccg
atggaccttcataagagtcttgatcatgaatttctggagactgagtctgactcgttcaga
ttaaagcttcagaaagttgtggcaaatcgtttggttttgccagacatctgcaggtcatat
attgacatcattgaaaggcagcttgaagtcagtgatttatctatgtcatcacgtgtgctg
ttaatgcatcaagttacagtctgggaattaattagggtcttgttctcagaaagagcaaat
ggaaaccagttggagcccattggagatgatgatcaggaaggcatggttttagacaagaaa
gaaggttctgtcaacatagatcttgatgcactccctttggttaggagagccgactttagc
aattggttgcaggacagtgtctgccatcgggtgcaaggcgaggtcggttccttaagtgat
gccaggtacttggaacatattcttcttcttttgactggtcgacaattggactcggccaca
gaagttgctgcctcaaggggtgatgtacggttggcagtcttgctaagtcaggcaggtgga
tcaatgacaaatcgatctgacctttctcagcaactggatctatggaaaatgaatggccta
gattttaattatattgaagaagacaggttaaaggtatatgagttgcttgctggtaacata
caggctgctttccaagattcatcaatcgactggaaaagataccttggtttgatcatgtgg
tatcaattacaacctgatacatcacttgatgttataattcgtttctacgatcatctcctg
agtaagggcaaagttccctatcctgttcctgtatatatagatgaaggaccacttgatgaa
gcacttaagtggtccccaggtgatcgttttgacatctctttttacctaatgcttcttcat
gccagtcaagacgagaagtttgggctgctaaaaactatgttcagtgcattctcatcttca
tacgatcccttggactatcatatgatatggcatcagcgttcaattttggaagctattggt
gctttcaattcaaatgatcttcacttgctggatttgagttttgtttatcagttactttgt
cttgggaagtgccattgggctatctatgtcattctacacatgccatatctcgatgatgcc
ccatacatccatgagaagttaatcagggaagttttatcacagtattgtgagttgtggagt
aaagatgatgctcaaaggcaatgcattgtggaacttggtataccagaagaatggatatat
gaagctctggctctttaccatgaatactatggagatcagcagggtgcattggagaatttt
attcggtgtggcaattggaagaaagctcatactattttcatgacctctattgctcatact
atgtttctgtcatcaaaccatcaggagatctgggagatcacaagtgccttggagaatcat
aaatctgaaattgctgactgggaccttggtgccgggatatacattgatttctacattctg
aagaactcaatgcaagaagaaagtgcaatggatgattcgcgttactttatctttcaggat
tcacttttgaagaaaaatgaatcatgcaaaagtttcttcggccgattaaatgattcatta
ctagtctggggaagcaaactacctgttgaatcaagggcatgctactcaaagatgacagat
gagctatgtgagcttttcatgaaggccccaggcgtggcaatgaatctacacatggaatgt
ttccagacgatgctgaatgctccggtcgctgatgaccgcaagtcatcatacctgcaagag
gccgtctctgtgttcaccgaaatcctgtgcagcgattcatga
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