Panicum virgatum (switchgrass): 120647206
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Entry
120647206 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120647206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120647206
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120647206
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Helicase_C_2
DUF4760
Motif
Other DBs
NCBI-GeneID:
120647206
NCBI-ProteinID:
XP_039779819
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Position
9K:complement(66435076..66440753)
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AA seq
913 aa
AA seq
DB search
MDPAGHKRQKLGDEHTSSPGTQSQSNIFLHNRRLRLQFLELFSELKAGSATKDLKSINIK
RRELMGIIERLQVPIQQPNASPVPKFSDATLYDSGLIASNYSSDNVINLDADEDNVEYHS
QANVGNVGVDSTVSAVDSDNKDRVKSCRDESSSSNDNGSYTQKHMLVEQQVGHQDIIRLD
NCNSSTEPHDLFKQPKDGMDTGNVSAEDDLEEKGKIRRMIKKHVGSYEVSCEIVQNEPQS
KESNHHEKDSSVDELNDLWMGMSVALAFSEQINQVNQGIVPIESNCEETEDACNHDFLLK
DDLGIVCRICGLIQQRIENIFEHSWKKHKQSYRTNPAKNRKSSDPDPTENPLGTNLNVFP
DSLSIHPRHSQQMKPHQVEGFNFLIKNLADENNPGGCILAHAPGSGKTFLLISFIHSFLA
RYPAGRPLIMLPKGIMGTWKSEFLRWQVENIPLYDFYSSKANSRSEQRKILKLWEENRSI
LLLGYQQFAHIISDDSSDRETVMCREKLLRIPSLVILDEGHTSRNDQTDLLSALETIQTP
RKVVLTGTLFQNHVSEVFNILNLVRPKFLKMQRSRAIMKRILNKVDMLGTSVRSKTISEK
VFYELIEQNLQKDSKTVRVMIIQNLRELTENILHYYQGEILKELPGLVDFTVLLNMSTKQ
EDVVKGLVGLKRFEAHAKSNAVSLHPCLKDVKNVDKKNRNICKRKMDSIVHRIDINDGVK
AKFIYNLLSLSEAAGEKVLVFSQYVRSLNFLETLFTKMKGWKAGVNTFLMDGGLTQEQRE
QAVERFNSSPEAKVFFGSIKACGEGISLVGASRVVILDVHENPAVMRQAIGRAFRPGQSK
MVYCYRLVAAGSPEEEDHHTAFKKERVSKLWFEWNELCNNEDFELTKVDVSDCKDMFLES
PVLQEDIKSLFKR
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgctggacacaaaaggcagaaacttggtgatgagcacactagctcaccaggg
acccagtctcagtcaaacatcttccttcataatagacgtcttcgtcttcagtttcttgag
ctattcagtgaattgaaggctgggagtgccacaaaagatctgaagtcaatcaacatcaaa
cggcgtgaacttatgggcatcatagaaaggctacaagtaccaatccaacagcctaatgcc
agtccagtgcccaaattttcagacgcaacactatatgactctggactaattgcgagcaat
tatagttcagataatgttatcaacttggatgcagacgaagacaatgttgaatatcattcc
caagctaatgtgggtaatgttggggttgattctacagtttcagcagttgattctgacaac
aaggacagggttaaatcctgtcgagatgagagttcatcctctaatgataatggtagttac
acccaaaagcacatgctggttgagcagcaagtcgggcatcaggatatcatcaggctggat
aattgcaatagcagtactgaaccacatgatttatttaagcaaccgaaggatggcatggac
accggcaatgtttctgctgaggatgatcttgaagagaaagggaagattcgaagaatgata
aagaaacatgttggttcctatgaagtatcttgtgaaattgtacaaaatgaaccacagagc
aaagagagtaatcatcacgagaaagacagctcggttgatgagttgaatgatctttggatg
ggtatgtcagttgcattggcattttcagagcagatcaatcaagttaatcagggtatagtt
ccaatagagagcaactgtgaggaaacagaggatgcatgtaatcatgacttcctgttgaaa
gatgatttgggcattgtgtgccgtatttgtggtctgatccagcagcgcattgagaatatt
tttgagcattcatggaaaaagcacaagcagtcatacagaacaaacccagcaaaaaacaga
aagtctagtgatccagatccaactgagaatcctttaggtactaatctcaatgtgttccct
gattctctgtcaatccatcctcgacattcacaacagatgaaacctcaccaagtggaaggt
ttcaatttcttgatcaagaatctggcagatgagaacaatccaggaggttgtattctagca
catgcgcctggctctggaaagacctttctgctgatcagttttatccacagctttctggcc
aggtaccctgctgggaggccattaattatgcttccaaagggtatcatgggaacatggaaa
agtgaatttctccgctggcaagttgagaacattcctttgtatgacttttactcctctaaa
gctaatagccggtctgagcagcgtaaaatattgaaattgtgggaagaaaacagaagtata
ttgctgcttggctatcagcaatttgcacacataatttctgacgactcttctgatagagaa
actgtaatgtgcagagagaaactgctgaggatccctagccttgtaattctagatgaaggc
cacacctcaagaaacgaccaaacagacttgctcagtgcacttgaaactatccaaactcct
cgaaaagtggttctaacaggaaccttgtttcagaaccacgtaagtgaggttttcaatatt
ttgaaccttgtacgaccgaaattcttgaagatgcagagatcccgtgcaatcatgaagcgt
atactaaataaggtggacatgttagggacaagtgtgcgatcgaaaaccatctctgaaaag
gttttctatgaattgattgagcagaaccttcagaaggattcgaaaacagtgagagtgatg
attatacagaatctacgagaacttactgagaatatactccactattaccaaggtgagatc
ttgaaggagctacctggacttgtggatttcacagttttgctaaatatgagtaccaaacag
gaagatgttgtcaagggtttggtagggttgaaaagatttgaagcacatgcaaaaagcaat
gctgtttctcttcatccatgcctaaaggatgtcaagaatgttgataagaaaaatagaaac
atctgcaaaaggaagatggattcgatcgtacacagaattgatatcaatgatggggtgaag
gcaaagttcatatacaatctgttgtcgctttcagaagctgcaggagagaaggtacttgtg
ttcagccagtatgtgcgctctctaaatttcttggaaacgctgttcaccaaaatgaaagga
tggaaagcaggagttaacactttcctgatggatgggggtttaactcaagagcagcgagag
caagcagttgagagattcaacagctcacctgaagctaaagtcttctttggttccatcaaa
gcatgcggggagggtatctcccttgttggtgcatctcgtgttgtcattttggatgtccat
gagaatcctgctgtgatgcggcaggcgatcgggcgggcgttcagaccaggccagtctaaa
atggtgtactgctaccgcctcgttgctgctggctcgccggaggaggaggatcaccatact
gcgttcaagaaagagcgagtgtcaaagctgtggttcgagtggaacgagctttgcaacaac
gaggattttgagctcaccaaggttgatgtttcagactgcaaggacatgtttcttgaaagc
cctgtgctacaagaggacatcaaatccctgttcaagaggtga
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