Panicum virgatum (switchgrass): 120647248
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Entry
120647248 CDS
T07260
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120647248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120647248
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
120647248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
120647248
NCBI-ProteinID:
XP_039779897
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All DBs
Position
9K:complement(66990357..66996268)
Genome browser
AA seq
728 aa
AA seq
DB search
MDGPEGVRGKEEAAPGREAGDAEEAGDGFQLVTHGKKKKRASGQEGGGAGSGAVLGAGSV
GALTKDKGAAPGTKPKVPFHDPSIPRPQDVYKIRVDNYKPFEHVWLERSEDGTRPVHPLE
KLPVEHFVDRNVPECEPVKPADIEDTPFTLVEDHKGLMELAKKLKSVTEFAVDLEHNQYR
SFQGLTCLMQISTRREDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGVDRDIMWLQRDF
HIYVCNLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPEEMIKYARE
DTHYLLYIYDLMKQRLQRESTPENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQE
HELNAKQLAVVAALHGWRDRIARQEDESTGYVLPNKALIEIAKQMPTDNGHLKRIVKSKY
PFVESSLDEIIYTIWNALEYSYAFEGIAEQLKKERLEQLALKSVPASDETTILDAESDRS
NIDPACQSSVAPSSTANVNVASDGGAGFMNETALISSIHLEDNTQTISSTKIFETLPGLT
RPINKDALSNNRYQQATEELKRPTLGALGNSAPGRQTENFGGFSKEKFQGGSNVDNFRSS
VLPYQQFSGGMKHSAAIGPTESFYPNTGIQSDNAWIQSTQMNEAMQLGNATYYTQFPGYS
TEVVGSQYEPEGMQMSSYLSGFEPAFQSVSQSPGTGVPPGRNKEGSFQNPMRRQSYPPSG
NRYDRPYQ
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcccgaaggcgtgagggggaaggaggaggcggcgccgggccgcgaggctggc
gacgccgaggaggcgggggacgggttccagctcgtgacgcatggcaagaagaagaagagg
gccagtggtcaggagggtgggggcgctggctccggcgccgtcctcggtgccgggtcggtg
ggggcgttgaccaaggacaagggagccgcgccggggacgaagccgaaggtgcccttccac
gatccaagcattccccggccgcaggatgtgtacaaaatcagagtggataactacaaaccg
ttcgagcatgtctggctggagcgcagcgaggatggcacccgacctgttcacccgctggaa
aaactgcctgttgaacacttcgtcgacagaaatgtccctgaatgtgaaccagtgaagcca
gctgatatagaggatacaccatttacgctggttgaagatcacaaaggcttgatggaatta
gctaaaaagctgaagagtgtaactgaatttgctgtagatttggagcacaatcaatatagg
tcatttcagggtttgacctgcttgatgcagatttcaaccagaagagaagacttcattgtg
gacactcttaagcttcgcatatacatcggtctctacttgcaagaaccttttaaagatcca
accaagagaaaggtaatgcatggtgtggatcgtgatataatgtggctccaacgggatttc
cacatctatgtatgcaatctttttgacacaggacaggcttctagggtcttacagatggag
agaaacagcctagagcacctattgcttcacttttgtggagtgacagcaaagaaggaatat
caaaatgcagactggaggtcgaggccacttcctgaagaaatgatcaagtatgctagagaa
gatacacactatctgctgtacatatatgacttaatgaaacagagactacaaagggagtcg
acacctgaaaatgatcttcttctagaggttcataagcgcagtaatgaaatttgcttacag
ttctatgaaaaggagctgctgacagatacatcctatctccatatatatgggttgcaggaa
catgagttgaatgcaaaacagctggctgttgttgctgctctacatgggtggagagatcgt
atagctcgtcaagaagatgagagcactggttatgtattaccaaataaggctttaattgag
atagcaaagcagatgcctacagataatgggcatttaaaaagaatagtaaaatcaaaatat
ccatttgttgagagcagtctcgatgaaatcatatacaccatttggaatgcgcttgaatat
tcttacgcatttgaaggaatagctgagcaactaaagaaggaacggttggaacagttggca
ttgaagagtgttccggccagtgatgaaacaactattttggatgctgagagtgataggagt
aatattgatccagcctgtcagtcttctgtggctccttcatcaactgcaaatgtcaatgtt
gcttctgacggtggggctggttttatgaacgaaacagctttgatcagcagcatccaccta
gaggacaatactcagaccatatcatcaactaagatcttcgagaccttgccagggctgacc
agaccaattaataaggatgccctgagcaataatagatatcagcaggctactgaagaactt
aagagacccactttaggagctttgggaaattcagcacctggaagacagacagagaatttt
ggagggttttcaaaggagaagtttcagggtgggagcaatgtggacaactttagatcttct
gtgcttccttaccagcagttctctggtgggatgaaacattcagctgctattggccccaca
gaatcattttatccaaatactggaatacagagtgacaatgcttggattcaatcaactcag
atgaatgaagcgatgcagctgggcaatgcgacttactacacacagtttccggggtatagc
actgaagttgtagggagccaatatgaacctgagggcatgcagatgtccagctacctgtct
ggttttgagcctgcctttcaatcagtaagccaaagtccgggaacaggagtacctcctggt
agaaataaggaaggaagtttccagaatccgatgagacgacaatcttacccgccttctggt
aacagatatgatagaccataccagtaa
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