Panicum virgatum (switchgrass): 120647297
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Entry
120647297 CDS
T07260
Name
(RefSeq) exosome complex component RRP41 homolog
KO
K11600
exosome complex component RRP41
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120647297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120647297
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120647297
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
120647297
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120647297
NCBI-ProteinID:
XP_039779961
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Position
9K:67327575..67335856
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AA seq
242 aa
AA seq
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MEFVDALTGFRVDGRRPNEMRKLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG
QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTELMPRSQID
IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYVEDSAGG
PDVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIATHIREVLLENTKRLECQ
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtggacgccctcaccggcttccgcgtcgacgggcgccgccccaacgagatg
cggaagctcaagggcgaggtcggcgttgtcgcgcgggccgacgggtccgcgctgttcgag
atgggcaatactagggtcatcgccgccgtctacggccctcgagaggtccagaacaaaggt
caacaagtgaacagcaaagaggctttggttcgttgtgagtataggatggcagaatttagt
acaggagatcggaggagaaagccgaaaggtgacaggcgatcaacagaaatttctcttgtt
attcgacagacaatggaggcaagcatattaacagagttaatgccacgttcacagattgat
atatttgtccaagttcttcaagctgatggtggaacaaggtcagcatgcatcaatgctgca
acactagctcttgcagatgctgggattccaatgcgagacattgtcacgtcttgcagtgct
gggtatctgtgttccactcctttgcttgatctgaattacgtagaagacagtgctgggggt
ccagatgtcacagttggtattcttgcaaagatggacaaagtgactcttcttcagatggat
gcaaaattaccgatggacacatttgaaaacgtaatgggacttgccatagaagggtgcaaa
gcaattgcaacacacatccgagaggtgctattggagaacacaaagcggctggagtgtcaa
cgtggttaa
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