Panicum virgatum (switchgrass): 120647320
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Entry
120647320 CDS
T07260
Name
(RefSeq) protein ELC-like
KO
K12183
ESCRT-I complex subunit TSG101
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03250
Viral life cycle - HIV-1
pvir03272
Virion - Hepatitis viruses
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120647320
03272 Virion - Hepatitis viruses
120647320
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120647320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120647320
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120647320
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-I complex
120647320
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120647320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UEV
Vps23_core
UQ_con
hemP
Motif
Other DBs
NCBI-GeneID:
120647320
NCBI-ProteinID:
XP_039780018
LinkDB
All DBs
Position
1K:complement(56650380..56653683)
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AA seq
390 aa
AA seq
DB search
MARSPPPPPSAGGAQYAQQFLNTALSQRGPSALPYAEDVKWLIRNHLVALAEAFPSLHPK
AALFTHNDGRAAHLLQADGTIPIHHAGASYNLPAVIWLPEPYPRSPPLVFLSPTRDMVIK
PHHPLVDRSGLVANAPYLRSWVFPSSNLVDLVRSLSHLFGLDPPLFTRNPPPPAAAPTPT
NPSPQPPPPRVSPSPSPSYRLGAFPASPQLTPRPPPTEDPAEVFKRNAVAKLVDMAYADA
AALRTAREAEVDALFAAQAELRHRGDLVAQGVRKMGEEKEALERRLQDVMMATDVVEAWV
TENTRRGNTQATEGAIEPADVLSRQMIECTAADLALEDTIYALDKAIQEGSVPFDGYLRS
VRALSREQFFHRALSAKVHTAQQQAPQYTS
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggcccgctcgccgccgcctcctccgtcggccggcggcgctcagtacgcgcagcagttc
ctcaacacggcgctctcgcagcggggcccctccgcgctgccctacgccgaggacgtcaag
tggctgatccgcaaccacctggtggcgctggccgaggccttcccctccctccaccccaag
gccgccctcttcacccacaacgacggccgcgccgcccacctcctccaggccgacggcacc
atccccatccaccacgccggcgcctcctacaatctccccgccgtcatctggctgcccgag
ccctacccgcgctccccgccgctcgtcttcctctcccccacccgcgacatggtcatcaag
ccccaccacccgctcgtcgaccgctccggcctcgtcgccaacgcgccctacctccgctcc
tgggtcttcccctcctccaacctcgtcgacctcgtccgatccctctcccacctcttcggc
ctcgacccgcccctcttcaccaggaaccctcctcctcctgccgccgctcccacgcccacc
aatccctcgccacagcctccgcccccgcgggtctccccctccccctccccctcctacagg
ctcggcgccttccccgcatcgccccagctcaccccccgcccgccccccaccgaggacccc
gccgaggtcttcaagcgcaacgccgtcgccaagctcgtagacatggcctacgcggatgcc
gccgccctgcggaccgcgcgcgaggccgaggttgacgccctcttcgccgcccaggcggag
ctgcgccacaggggtgacctcgtcgcccaaggggtgcgcaagatgggggaggagaaggag
gcgcttgagcgccgcctgcaggacgtcatgatggccaccgatgtcgtggaggcctgggtc
acggagaacaccaggagaggcaacacccaggccacggagggcgccatcgagccagcagat
gtgctctccaggcagatgatcgagtgcacggccgcagatttggcgcttgaggataccatc
tacgcgcttgacaaggccattcaggaaggatcggtgccctttgatggctacctcaggagc
gtgcgcgcactgtcacgcgagcagtttttccaccgcgccttgtctgccaaggttcacact
gctcaacagcaggcaccacagtacacatcctag
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