Panicum virgatum (switchgrass): 120647383
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Entry
120647383 CDS
T07260
Name
(RefSeq) putative aconitate hydratase, cytoplasmic
KO
K01681
aconitate hydratase [EC:
4.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00020
Citrate cycle (TCA cycle)
pvir00630
Glyoxylate and dicarboxylate metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01200
Carbon metabolism
pvir01210
2-Oxocarboxylic acid metabolism
pvir01230
Biosynthesis of amino acids
Module
pvir_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pvir_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
pvir_M00012
Glyoxylate cycle
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
120647383
00630 Glyoxylate and dicarboxylate metabolism
120647383
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.3 aconitate hydratase
120647383
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Gene cluster
GFIT
Motif
Pfam:
Aconitase
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
120647383
NCBI-ProteinID:
XP_039780096
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Position
9K:68438537..68445588
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AA seq
989 aa
AA seq
DB search
MPPLTSALLSRSTTGSSTRVSAAAAAAISRPAADAAPSSSPPPSRPIPRPRPSPASPFAS
GLAGRLFSGHRATARSASSATAVFERRFASAATRNTYDEILTGLGRPGGGEEFGKYYSLP
ALSDPRIDRLPYSIRILLESAIRNCDDFQVTGKDVEKILDWENSAPKQVEIPFKPARVLL
QDFTGVPAVVDLACLRDAVSKLGSDPNKINPLVPVDLVIDHSVQVDVARSQNAVQANMEL
EFHRNKERFGFLKWGSSAFRNMLVVPPGSGIVHQVNLEYLARVVFNNGGILYPDSVVGTD
SHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVT
QMLRKHGVVGKFVEFYGQGMSELSLADRATIANMSPEYGATMGFFPVDAKTLDYLKLTGR
SDDTVAMVESYLRANKMFVDHNQVEAERVYSSYLELNLEEVEPCLSGPKRPHDRVTLKNM
KSDWHSCLDNNVGFKGFAVPKESQGKVAEFSFHGTPAKIKHGDVVIAAITSCTNTSNPNV
MLGAALVAKKACELGLEVKPWIKTSLAPGSGVVKKYLDKSGLQKYLDQLGFHIVGYGCTT
CIGNSGELDESVSAAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT
VNIDFEKEPIGISKDGKEVYFRDIWPSTEEIAEVVKTSVLPDMFKSTYEAITKGNPMWNE
LSVSTRTLYPWDPSSTYIHEPPYFKDMTMTPPGPRPVKDAYCLLNFGDSITTDHISPAGS
IHPDSPAAKFLKERGVERKDFNSYGSRRGNDEIMARGTFANIRLVNKFLKGEVGPKTIHV
PSGEKLAVFDAAMKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIH
RSNLAGMGIIPLCFKAGEDADTLGLTGHERYTIHLPTNVSDIKPGQDVTVTTDTGKSFAC
TLRFDTEVELAYYDHGGILPYVTRKIAEQ
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccctcacgagcgccctgctctcccgctccaccaccggctcatccacccgcgtc
tccgccgcggcggccgcggcgatctccaggcccgccgcggacgccgccccgtcgtcctcg
cctcccccttcccgcccgatcccgaggccgcgccccagcccggcgtcgcccttcgcgtcc
ggcctcgcgggccgcctcttcagcggccaccgcgccaccgcccgctccgcatcgtctgcg
accgccgtcttcgagcgccggttcgcctccgcggcgaccaggaacacttacgatgaaatc
ctgacgggcctcgggaggccaggaggcggagaggagttcgggaagtactacagtctgccc
gctctctccgatccgaggattgatcggctcccctactccataaggattctccttgaatcg
gcaatcagaaactgcgatgacttccaggtcactggtaaggatgttgagaagatcttggat
tgggagaacagcgcaccaaagcaagttgaaatcccattcaagcccgcccgtgttcttctc
caggattttactggtgtcccggcagttgttgatcttgcatgcctgagggatgctgtgagc
aaacttggcagcgacccaaacaaaattaatcctctggttcctgtagaccttgttattgat
cattcagtacaagtcgatgttgcaagatcacaaaatgctgttcaggcaaatatggagctc
gagttccatcgtaacaaggagcggtttggtttcttgaaatgggggtcttctgcattccgt
aacatgcttgttgttccacctgggtctggcattgtccaccaggtgaatcttgagtacctg
gccagggttgtgtttaacaatggtgggatcctttaccctgacagcgtagtaggaactgat
tctcacacaactatgattgatggtctcggtgttgctggatggggagttggtggcatagag
gcggaagctgcaatgcttggccagccaatgagcatggtcttgccaggtgttgtcggtttc
aagttatcaggcaagctgaggaatggagttacagccacagatttggttctaacagtaact
caaatgcttcgtaaacatggcgttgttggaaaatttgtcgagttctatgggcaaggtatg
agtgaactgtcacttgctgatcgggccaccattgcaaacatgtcaccagaatatggtgca
actatgggtttcttcccagttgatgcaaagacactggactatttaaaacttactggcaga
agtgatgatacagtggccatggtagagtcctatttgcgtgccaataagatgttcgtcgac
cacaaccaggttgaagctgaaagagtgtattcttcttatctagaacttaaccttgaagag
gttgaaccatgtctatcaggaccaaaacggcctcatgatcgagtgacattgaagaacatg
aagtcggattggcattcttgcttggacaacaatgtagggtttaagggcttcgctgtcccc
aaagaatcacagggcaaagttgcagagttttcattccatgggactcctgcaaagataaag
catggcgatgttgtaattgcagctataactagttgcaccaacacatcaaatcctaatgta
atgctgggagctgctttggttgcgaaaaaggcttgtgaattaggcctagaggtcaagccg
tggatcaagacaagccttgcacctggttctggtgttgtgaagaagtacttggacaagagt
ggtctgcagaaatatcttgatcagcttggcttccatattgttggctatggttgcacaacc
tgcattggaaattctggagaacttgatgaatctgtgtcagctgcaatttctgagaatgat
attgttgctgctgctgtcttgtctggtaacaggaatttcgaaggacgtgtacatccattg
accagagcaaattaccttgcttctcctccactagttgtggcttatgccttggctggcacg
gttaatattgattttgagaaagaacctattggcatctcgaaagatgggaaagaggtttac
ttcagggacatttggccttccacagaagagatagccgaggttgtcaagaccagtgttctc
cctgatatgttcaagagcacatatgaggcaatcacaaaaggaaatcctatgtggaatgag
ctgtcagtctcaacacgcactctctacccatgggatccctcatctacttacatccatgag
cctccttatttcaaggatatgacaatgacccctcctggcccacgacctgtgaaggatgca
tattgccttctgaactttggagacagtatcacaaccgatcacatctcccctgccggaagc
attcacccagacagcccagctgcaaaatttctgaaggagcgtggtgttgaaaggaaggac
ttcaactcatatggtagccgacgaggaaatgatgagatcatggctaggggaacttttgcc
aacatccgccttgtgaacaagttcttgaagggtgaggttggcccaaaaacaatccatgtt
ccgtctggggagaagcttgctgtttttgatgctgcaatgaaatacaagaatgaagggcat
gatactataatcctggctggtgctgagtatggtagtggaagctctcgggattgggctgca
aagggcccaatgcttcagggagtcaaggctgtgatagcaaagagctttgagaggattcac
cgaagcaatcttgctggcatgggaattatccctctttgcttcaaggcaggggaggatgca
gacacccttggcttaacaggccatgagcgctacacgatccaccttccgaccaatgtgagt
gacataaagcctggacaagatgttaccgtgacaactgatactgggaagtctttcgcttgc
acgctcagattcgacactgaggtggaacttgcgtactacgaccatggaggcattctaccg
tacgtcactagaaagattgcagagcaatag
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