KEGG   Panicum virgatum (switchgrass): 120647440
Entry
120647440         CDS       T07260                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120647440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120647440
   03036 Chromosome and associated proteins [BR:pvir03036]
    120647440
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120647440
 Complex B
    120647440
 Complex C
   U2 SnRNP specific factors
    120647440
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    120647440
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Cnd1 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME IFRD RseA_N
Other DBs
NCBI-GeneID: 120647440
NCBI-ProteinID: XP_039780209
LinkDB
Position
1K:3713098..3718166
AA seq 1278 aa
MDGVEAEIARTQEERRKMEEALAAGAPMAVSSVTFDTDLYGGGGADPNRFAGYDTSIPAS
EDDAAEEDTEAANPAPRRLAAYTGHAIAAADLPRSADDDGGLPKRSQRIIDREDDYRRRR
LNQIISPERHDPFAAGEATPDPSVRTYADVMRDAALQKKKEDLLREIAKKKEEEEKEKEK
KAAAPEQPAATTKRRNRWDQSQDSDAGAGAKKAKTSSDWDAPDATPGIGRWDATPGRVGD
ATPSVRRNRWDETPTPGRMADADATPAAGGVTPGATPSGAWDATPKLPGGVTPTPGKKQR
SRWDETPASMGSATPGGLGAATPAGYTPGPTPFGAENLATPTPSQIARGPMTPEQYQLMR
WERDIEERNRPLTDEELDAMFPQEGYKILEPPASYQPIRTPARKLLATPTPLGTPLYAIP
EENRGQHFDVPKEVSGLPLIKPEDYQYFGSLLNEEEEEQLSPEEQKERKIMKLLLKVKNG
TPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV
RPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNT
TARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLKSLV
EIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDTVLKPLWKGIRSHRGKVLAAFL
KAIGFIIPLMDALYASYYTKEVMQVLIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR
NDILPHFFKHFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRVVEDLKDESEPYRRM
VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVK
PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHV
INAVMEAIEGMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPA
LEDDGDNIFSRPELAMFV
NT seq 3837 nt   +upstreamnt  +downstreamnt
atggacggggtcgaagcggagatcgcgcgcacgcaggaggagcggcgcaagatggaggag
gcgctggcggccggcgcgcccatggccgtctcctccgtcaccttcgacaccgacctctac
ggcggcgggggcgccgaccccaaccgcttcgccggctacgacacctccatcccggcgtcc
gaggacgacgccgcggaggaggacacggaggccgccaaccccgcgccgcgccgcctcgcg
gcctacacgggccacgccatcgccgccgccgacctcccgcgctccgccgacgacgacggg
gggctgcccaagaggtcccagcgcatcatcgaccgcgaggacgactaccggcgccgccgc
ctcaaccagatcatctcgccggagcgccatgacccgttcgctgccggggaggccaccccg
gacccctcggtgcggacctacgccgatgtcatgcgcgatgcggcgctgcagaagaagaag
gaggacctgctgcgggagattgcgaagaagaaggaagaggaggagaaggagaaggagaag
aaggctgctgcgcccgagcagcccgccgccaccacgaagcggcgcaacaggtgggatcag
tcgcaggacagcgatgctggtgctggggccaagaaggcaaagacatcctcggactgggac
gcccctgatgcaactcctgggattggccgttgggacgccacacctggacgtgttggagat
gctacgccctctgtgagaaggaatagatgggacgagacaccgactccagggaggatggct
gatgctgatgcgacgcctgcagctggtggtgttaccccgggtgcaactccttctggggct
tgggatgcaactccaaagctgcctggtggtgtcacaccaacccctggtaagaagcagaga
tcaaggtgggatgagacaccagcgagtatggggagtgccacccctggtggtcttggtgct
gcgacacctgctggttatactcctggaccgacaccatttggtgcagagaaccttgccacg
ccaactcctagccagattgctcgtggcccgatgactccagagcagtaccagctcatgcgg
tgggagcgggacattgaggagaggaacaggcctctcactgatgaggagcttgatgccatg
ttcccgcaggaggggtacaagattcttgagcctccggcttcctaccagcctataaggacc
ccggcaaggaagcttcttgcaacaccaacacctctgggaacaccactttatgctattcca
gaggagaatcgtgggcagcattttgatgtgcccaaggaggtcagtggtttaccgctcata
aagccagaggattatcaatactttggatctttgctgaatgaggaagaggaggagcagcta
tcgccggaggagcagaaggagaggaaaatcatgaagctgttgctcaaagtgaagaatggc
acacccccacagcgtaaaacagcacttcggcagctgacagacaaagctcgggaatttggt
gctggaccgctgttcaacaagatcctgcccttactcatgcagccaacactggaggaccag
gagcggcatcttctggtgaaggtcattgatagggtgctgtataagctggatgagctggtc
cgtccatttgtgcacaagattcttgtggttattgagccactgctgattgatgaggactac
tatgctcgtgttgagggccgggagatcatctcaaatcttagcaaagcagctggtcttgcc
actatgattgctgccatgcggccagatattgataacattgatgagtatgttagaaacacc
actgctagggcgttcagtgtggtggcatctgctttgggtatccccgcgctcctaccattc
ttgaaggctgtctgtcagagtaagaagtcttggcaggcgcggcacactggtatcaaaatc
gttcagcagattgctattctcatgggctgcgctgttctgccacatctcaagtcactagtt
gagatcattgagcatggtctgagcgatgagaaccaaaaagtgcggaccattaccgccctt
tctcttgctgcactagctgaggctgctgcaccctacggcatagaaagctttgatactgtt
ttgaagcctttgtggaagggtatcagatctcaccgtggaaaggtccttgctgccttcttg
aaggccattggtttcatcatccctctgatggacgctctgtatgctagttactacacaaag
gaggttatgcaggtccttattagggagttccagtcaccagatgaagagatgaagaagatt
gtcctcaaggtcgtgaagcagtgtgtcagtacagagggtgtggaggctgattatatccgg
aacgacatccttcctcatttcttcaagcacttctgggttaggagaatggctctagatcgt
aggaactataagcagcttgtggagactacagtggagatggcgaataaggttggagttgct
gatattgttgggagggtagttgaggatctgaaagatgaaagcgagccctatagaagaatg
gtgatggaaacaattgagaaggtggtggccaacttgggtgcttcagatattgatgctcgt
ctagaggagctgcttattgatggtattctgtatgctttccaagagcagacaagtgatgat
gcaaatgttatgcttaatggttttggagctgtggttaatgcacttggacaaagagttaag
ccttaccttcctcagatttgtggtaccatcaagtggagattgaacaacaagagcgcaaaa
gttaggcagcaagctgctgatctgatctccaggatagccattgtcatgaagcagtgccag
gaggagcagctcatgggtcacttgggtgttgtgctgtatgagtacttaggagaggaatat
cctgaagtgttgggttcgattcttggagccttgaaggctatcgtcaatgtcattggtatg
actaaaatgactcccccaatcaaggatcttcttcctcgtctgacccccatcttgaagaac
aggcatgagaaggtccaagagaactgcattgatcttgttggtaggattgctgatcgtgga
gcagaatttgtgccagcaagagaatggatgaggatttgttttgagctgcttgaaatgttg
aaggctcacaagaagggtattaggagagccactgtgaacacatttggttatattgctaag
gctattggacctcaggatgtgttggcgaccctgttgaataacttgaaggtgcaggagcgt
cagaaccgtgtttgcacaactgtagcgattgcaattgttgctgaaacttgctcacctttc
acagttttgcctgcccttatgaacgagtaccgagtcccagagctcaatgtccaaaatggt
gttctgaagtccctctctttcctctttgagtatattggtgagatgggcaaagattacata
tatgctgtcactcccttacttgaagatgcccttatggatagagatctggttcaccggcag
actgctgcctctgctgttaagcacatggctctgggcgttgctggcttgggatgtgaggat
gctcttgtccatctgcttaactatgtgtggcccaacatttttgagacatctccccacgtt
ataaatgctgtcatggaggcgatcgaggggatgagggttgcactaggtgcagctgtgatt
ttgaattattgcctgcaaggtctcttccatccagcaaggaaagtgcgagaagtgtattgg
aagatctacaactctctatacatcggtgcccaggatgcgcttgttgcttcatatcctgca
ctggaggatgacggggataacatctttagccgtcccgagctggcaatgtttgtctga

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