Panicum virgatum (switchgrass): 120647451
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Entry
120647451 CDS
T07260
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120647451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120647451
03041 Spliceosome [BR:
pvir03041
]
120647451
03036 Chromosome and associated proteins [BR:
pvir03036
]
120647451
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120647451
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120647451
Complex B
120647451
Complex C
U2 SnRNP specific factors
120647451
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120647451
TFTC complex
120647451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120647451
NCBI-ProteinID:
XP_039780183
LinkDB
All DBs
Position
9K:69250734..69256660
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDTKKSAASGSASTQEIAVARGSTLDLLRPDPETGR
LRTLLSVDVFGVIRSLAQFRLTGANKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK
SGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTITFS
LTALDCGFDNPIFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKASEPID
NGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVAAAT
HRQKSMFFFLLQTEYGDIFKVDLEHSGETVTELRIKYFDTIPVASATCVLRSGLLFAASE
FGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRPLKNLIRIDEIESLMPVMDM
RIANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMF
DAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPNGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGG
EDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGET
FNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLEASGATENGNANN
GDPMENGDGQEDGAEEGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRTLAGGFIHIYKFVDEGKSLELLHKTQVE
EVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIISIHTYRDRIYVGDMQ
ESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKFGNIYFARLPQDISDEI
EEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECLIYGTVMGSV
GALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggcgccgtgtgcgccgtcatcggc
agcttcagcgggcgcgacacgaagaagtcggcggcctccgggtccgcctccacgcaggag
atagccgtcgcccggggcagcacgctcgacctcctccgcccggacccggagaccggccgc
ctccgcacgctcctctccgtcgacgtcttcggcgtcatccgctcgctcgcgcagttccgc
ctcaccggcgccaacaaggactacctcgtcgtcggctccgactcgggccgcctcgtcatc
ctcgagtactcccccgaccgcaaccgcttcgacaaggtccaccaggagacctttggcaag
tccggctgccgccgcatcgtccccggccagctgctcgcggtcgaccccaagggccgcgcg
ctctgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgacgccgcc
gcgcgcctcaccatctcgtccccgctcgaggcgcacaagtccaacactatcaccttctcc
ctcaccgccctcgactgtggattcgacaaccccatcttcgccgccatcgagctcgagtat
gctgagtctgaccgcgaccccacggggcaggctgctaaccaggcgcagaagctcctcacc
ttctacgagcttgacttgggcctcaaccatgtctcccgcaaggcctctgagcccattgat
aatggcgccaatcttcttgtgactgtccctggtggcggcgatggtccgagcggggttctt
gtgtgctgcgataactttgtgctgtaccggaaccaggggcatccagaggttcgtgctgtt
attccacgccgtgctgacctgcctgctgagcgtggtgtcctcattgttgctgctgctaca
cacagacaaaagagtatgttcttcttcttactacagaccgagtatggtgacatcttcaag
gtcgatctggaacatagtggggaaactgttactgagctcaggatcaagtacttcgacacc
atacctgtggcatcagctacctgtgtgctgcggtctggtttactctttgctgcttctgag
tttggcaaccatgcactttaccaattccgtgatattggccgggatgcggatgttgagtca
tcttcagcaacactgatggagacagaggaggggttccagccggttttctttcagccaagg
ccactaaagaacctcatccgtatagatgagattgagagcctcatgccagtcatggatatg
cgtattgcgaatttatttgatgaggagacaccccaattgttcacagcctgtggccgaggt
ccacgctccacgctgcgcatcctgaggcctggccttgccattagtgagatggcacgatca
atgctgcctgctgagcctattgccgtgtggactgtcaagaagaatatcaatgacatgttt
gatgcctacattgttgtgtcctttgctaatgtcacgctcgtgctctctattggtgagacc
attgaagaagtcagtgacagccagttcctggacaccactcactcccttgcagtcactctc
cttggtgaggactctctcatgcaagtccatccaaatggtatcaggcacatcagggaggat
ggccgtgtcaatgagtggagaactcctggaaagaaaactataacaaaggttggatcaaac
cggctccaggtggtaattgccctcagtggcggagagctcatctattttgagatggacatg
acgggtcagctcatggaggtggagaaacaggacatgtctggcgatgttgcatgcctggcc
attgcgccggttcctgagggtaggcaaaggtccagatttctcgctgtaggatcctatgat
aacaccatccgtatcctgtcgctggaccctgatgactgcctgcagcctctaagtgtgcag
agtgtatcatccgcaccagagtcactcctattcctagaggtacaggcatcagttggtggt
gaggatggtgcagactatccagccaaccttttcctcaatgctggcttgcagaacggtgtt
cttttccggaccaatgttgacatggttacgggccagctatcggacacacggtctcgattc
cttggcctcaggcctccaaagctgtttccctgtatagttagccacaggcaagcaatgctt
tgcctgtccagccgtccctggctgggctatatacatcaaggtcacttcctcttgacgcct
ctgtcttgtgatacactcgaatctgctgcatccttctcttctgatcagtgctcagaaggt
gttgttgctgttgccggagatgccctacgcattttcaccattgaacgcctgggggagact
ttcaatgagacggccatccctctgcgctacaccccaaggaagtttgtgattctaccaaag
aaaaaatatattgctgtcattgagagcgataagggtgcattcagcgcagaagagcgagaa
gctgctaagaaagagtgcctcgaggcttctggtgcaacagagaatggaaatgcgaacaat
ggggatccaatggagaatggtgatggtcaagaagatggtgctgaggagggcaacacattt
cctgatgaacagtacggttatccaaaagcagaatcagagcggtgggtttcctgcattagg
atcctggatccaaggagtagggacacaacctgtctgctggaattgcaggacaatgaagct
gctgtcagtatttgcactgtgaatttccatgataaggagcacggcactcttcttgctgtt
ggcactgccaagggattgcagttctggccaaagcggacccttgctggtgggttcatccac
atatataagtttgtggatgaagggaagtcacttgaacttctacacaagacacaagtggag
gaagtacctcttgcgttgtgccaattccagggacggttacttgcaggtgttggttcagtg
ctcagactatatgatctggggaagagaaaattgctcaggaaatgtgaaaacaagcttttt
cccagaacaattatatctattcatacctaccgtgataggatctatgttggtgatatgcaa
gagtcatttcactactgcaagtacagaagggatgaaaaccagctgtatatctttgctgat
gacagtgttcccagatggcttacagcagctcaacacatagattttgacactatggctgga
gctgacaagtttgggaatatatattttgctcgtcttcctcaggatatctcagatgagatt
gaagaagatccaactggaggcaagattaaatgggagcaagggaagctaaatggtgcccct
aacaaagttgaggaaatcgtgcagtttcatgttggtgatgttgtaacaagtttgcagaag
gcctctttaattcctggtggaggtgaatgtcttatttatggaactgtgatgggcagtgta
ggggcactgcttgcatttacctccagggaagatgttgacttcttctctcatttggagatg
catctccgtcaggagcatccaccattatgtggaagagatcacatggcttacagatctgca
tattttccggtgaaggatgtgatagatggcgatctctgtgagcagtatccatcccttcca
gctgatatgcagaggaagatagctgatgagcttgacagaactcctggtgaaatccttaag
aagctagaagacattaggaacaaaatcatctaa
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