Panicum virgatum (switchgrass): 120647643
Help
Entry
120647643 CDS
T07260
Name
(RefSeq) probable helicase CHR10 isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120647643
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120647643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
Motif
Other DBs
NCBI-GeneID:
120647643
NCBI-ProteinID:
XP_039780443
LinkDB
All DBs
Position
9K:70855851..70864974
Genome browser
AA seq
925 aa
AA seq
DB search
MTAQLDLAQPNNNDQPSSRSSPLLSSPSLPMATSYERRLLAAADLVLSADAQGQGACLPE
LGVTADLKPHQLDGVAWLIRRYRLGVNVVLGDEMGLGKTLQAISLLSHLKIQRVAPGPFR
LTPAVVLCPLSVTDGWLAEFSKFCPSLRLLHYVGNKVHRRDLRRTLYDHVHKASTSSHSS
ELSFDVLLTTYDIALMDQNFLSQIPWHYAIIDEAQRLKNPSSVLYNVLEQRFIMPRRLLL
TGTPIQNNLSELWALMHFCLPSIFGKLDEFLSTFKEAGDSLTGAEANKANRQFEIIKHIL
KAFMLRRTKALLIESGVLALPPLTELTVMVPLTQLQKKLYMSVLRKELQTLLSFTGGSSR
HQSLQNIVIQLRKACSHPYLFSGIEPEPFVEGEHLVQASGKLIVLDLILKKLHELGHRVL
LFAQMTQTLDILQDFLEMRNYTYERLDGSVRAEERFAAIRNFSSQSTKGLMRDDNQIGAF
VFMISTRAGGVGLNLIGADTVIFYEQDWNPQADKQALQRAHRIGQLNHVLSINLVSQRTI
EEVIMRRAERKLKLSHDIIGEDHRTDVKGGVLGNEASDMRSIIFGLHLFDPADTTTETIN
EGTTSDTINVEKLAKLKTMSEKVVMMRSHEPSEKDERAFEINPNFADGNGTVIRRASDSI
SVDPGLNEAAYLSWVNKFKEASRSIEDATSELGRQRAAPKEKFLKRVVNKKKVEEKRFAK
WETLGYKTLAVKEPDITACQNISDSGCVQLVYGDCTNPSKLCPAKPAIIFSCIDNSGTWG
HGGMFDALTSLSTCIPDAYHRASEFDDLHMGDLHLIQLDEVNCTRSLDAPLWVALAIVQS
YSRRRKVPRSEISIPDLELCLSKAAFSAAQHSAIIRMPRIGYQSGSQRSEWYTIERLLRK
YSSLHGIDIFVYYFQRSSRQQTGSI
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgactgctcagctggatctggcccaacccaacaacaacgaccagccgtcgtcgcgctcc
tctcctctcctctcctctccttccctccccatggcgacctcctacgagcgccgcctacta
gcggccgccgacctggtcctctccgccgacgcgcagggccaaggagcctgcctccccgaa
cttggcgtcacggcggacctcaagccgcaccagctcgatggcgttgcctggctcatccgc
cgctaccgcctcggcgtcaacgtcgtcctcggtgatgagatggggcttggcaagacccta
caagcaatttctctactgagccacctcaaaatccagcgtgttgcacccggaccattccgg
ttaacccctgcagttgtgctatgtcctctaagtgtaacagatggctggctcgcagagttc
agtaaattctgtccttccttgaggctcctgcactatgttggcaataaggtgcaccgtcgt
gatcttcggagaaccttgtacgatcatgtgcacaaggcttccacatcatctcattctagc
gaattatcatttgatgtgctcttgacaacatatgacatagccttgatggatcaaaacttt
ctttcacaaattccctggcactacgcaattattgatgaggctcaacgtcttaaaaatcca
tccagtgtactgtataatgtccttgagcaacgtttcatcatgccaaggcgtctactacta
acaggcactcctatccagaacaacctttctgaactatgggctttgatgcacttttgtttg
ccttcaatatttggaaagctagatgagtttctttccactttcaaggaagcaggggactct
ttaacaggtgccgaagctaataaagcaaacagacagtttgagattattaaacacatactt
aaagcatttatgctacgcaggacaaaagctttactaatcgagagtggagttctggcgctg
cctccactaactgagctaactgtgatggtgccactgacacagttacaaaagaagctttac
atgtcagtgttgaggaaagagctgcaaacacttctttcatttactggaggatcgtctcgc
caccagtctttgcagaacattgttatacagctgaggaaagcttgcagtcacccatatctg
ttcagtggcattgaacctgagccttttgtggaaggggagcatttagttcaggctagtggg
aagctcattgtgttggatcttattctgaagaagctccatgagttaggacatcgtgtttta
ctatttgctcagatgacccaaacactggacattctgcaggatttcctggagatgcgcaat
tacacttatgagcgcctggatggttcagtacgtgctgaggagcggtttgcagcaataaga
aatttcagctctcaatctactaaaggccttatgagagatgataatcagattggagctttt
gttttcatgatatcaactagagcagggggtgtggggcttaatctcattggtgccgatact
gttatcttttacgaacaagattggaatcctcaagctgacaagcaggctctacagcgcgct
catcgcattggacagttaaatcatgtgctgtcaataaatttggtgtcacagcgtacaatt
gaagaggtcataatgcgaagagccgagagaaaacttaagcttagccacgatattattgga
gaagatcatagaactgatgtgaagggtggagttctgggaaatgaagctagtgacatgaga
tcaattatctttggcttgcacctgttcgatcctgctgatacaaccacagagacaatcaat
gagggcaccacttctgacacaattaatgtggagaaactggcaaagttgaaaacaatgtct
gaaaaggttgtaatgatgcgtagccatgaaccttcagaaaaggatgaacgggcatttgaa
atcaacccaaattttgctgatggcaatggaactgtaattagaagggcttctgattctatt
agtgttgatcctgggcttaatgaagctgcatacctatcctgggtcaataagttcaaagag
gcttcgcgttcaattgaagatgccacatctgaacttggaaggcaaagagcagcgccaaaa
gaaaagttcctgaaacgtgtagttaacaagaaaaaagtagaagaaaagaggtttgccaaa
tgggaaactttgggttacaagacactagctgttaaggaacctgatatcacagcatgccag
aatatttcagactcaggatgcgtccaacttgtgtatggagattgtaccaatccttcaaaa
ctttgccctgcaaagcctgccatcatattcagttgcatagataattctgggacatggggg
catggaggaatgtttgatgctttgactagtctctcaacatgcattccagatgcttatcac
cgtgcttctgagtttgatgacctccacatgggggatcttcacttgattcagcttgatgaa
gtcaactgcacccggagtttggatgcacctttatgggtggcactagctattgttcagtct
tacagtcggagacgtaaagttccaagaagtgaaatctccatacctgatttggagctctgt
ttatcaaaagcagccttctcagctgctcagcattctgcaattatccgcatgccccgaatt
ggttaccaaagtggctcccaacgatcagaatggtataccatagaacgcctgctcaggaaa
tactcatctctccatggaatcgacattttcgtgtactactttcagcgttcatccaggcaa
cagacaggttctatctag
DBGET
integrated database retrieval system
