KEGG   Panicum virgatum (switchgrass): 120647656
Entry
120647656         CDS       T07260                                 
Name
(RefSeq) DNA repair endonuclease UVH1 isoform X1
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
pvir03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    120647656
   03460 Fanconi anemia pathway
    120647656
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120647656
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120647656
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    120647656
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120647656
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-GeneID: 120647656
NCBI-ProteinID: XP_039780463
LinkDB
Position
9K:complement(70962627..70967685)
AA seq 991 aa
MLAFEEQVVSDLVEDPNGGLVVLSSGFPLASLAAALLLQLHLHPPPGDAAGGGCLLVLSA
PDPLKARIRRRLQARLQVHDVPPDLPAQQRASLYASGAALFLSPRALAADLLTSRLHPSH
VRALLLLSAHRSSDTSSDAFIARLLRQRHLLPVYAFSDRPHAMVAGFSKAERAMKSLYIR
RLHLWPRFHVLAAADLERAPPDVVDVRVPLTPAMRGIQAAVLAAMDACLKELRRTNKVDV
EDLTLDKGLFKSFDEIVRRQLDPIWHTLGRKTKQLVADLRTLRKLLDYLVRYDAVTYLKY
LDTLRVSEGVRSVWILADSSHKIFELAKRRVYQVVRADGIKVSTDNKGTPTKKRKVVHNS
TDKGKENENEGSTADKHSIQKVNADVGIVLLEVLEEAPKWKVLRELLQEIAEEQMKGDHE
NAQDEDESGIVLVTCKDERTCFQLQECISKDPHKVMREEWEKYLLGKAELHGLQKKNKKK
SEQPKGFGILDGEVQMGPNESAGPVSISKLETNALLAAASELRNITKEADVKDGSNVSCT
RRELVKGKAKGKSKKTTEKRQGSNRKNRSNGGNDNNQVTAVEAKGQSSKTDEHADIDASK
VSTDEDFMLASTSGGASNYSSDFRGLANGKPLPPVQFHALDSDQHILDVWKPSNIIVYHP
DITFVREIEVYKAENPSRKLKVYFLFYEDSTEVQKFESSIRRENEAFESLIRQKSLMMIP
VDQDGHCIGPTLANEPEPLLCQNSITRKAGGKRAPEKEMQVIVDMREFMSSLPNVLHQKG
IRIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMTRYYKIPVLLIEFSQ
DKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRIVWSRSLHATAEIFVSLKTNQDEP
DEKKAIRVGVPSEDGIVEDDVRAENYNTSAIEFFRRLPGVTDSNYRAIMDGCNSLAELSL
LPLEELAGLMGSQKGARTLKEFLDAKCPTML
NT seq 2976 nt   +upstreamnt  +downstreamnt
atgcttgcgttcgaggagcaggtggtgtcggacctggtggaggaccccaacggcgggctg
gtggttctctcctcgggcttcccgctcgcctccctcgccgccgccctcctcctccagcta
cacctgcacccgccccctggcgacgcggcgggcggaggatgcctcctcgtcctctctgcc
ccggaccccctcaaggcccggatccgccgccgcctccaagccaggctgcaggtccacgac
gtgccccccgacctccccgcccagcagcgcgcctccctttatgcctctggcgccgccctc
ttcctctccccccgcgctctcgccgccgacctcctcacctcccgcctccacccctcccac
gtccgggccctcctcctcctctccgcccaccgctcctccgatacctcctctgacgccttc
atcgcccgcctcctccgccaacgccatcttctccccgtctacgccttctctgaccgcccc
cacgccatggtcgccggtttctccaaggccgagcgtgccatgaagagcctctacatccgg
cgtctccatctctggccccgcttccacgtcctcgccgccgcagacctggagcgcgccccg
cctgacgtggtcgacgtccgcgtccccttgacgcctgccatgaggggcatccaggccgcc
gtcctcgctgccatggacgcctgcctcaaggaactcaggcgcaccaacaaggtggacgtc
gaggatctcacccttgacaagggccttttcaagtccttcgatgagatcgtcaggaggcag
ctcgaccccatctggcacactctcggcaggaagacgaagcagctggtggcggacctcagg
acgctacgcaagctgctcgattaccttgtcaggtatgatgcagttacatacctcaagtac
cttgacacgctgagagtatctgaaggtgttagatcagtttggatacttgctgactcaagc
cacaagatatttgagcttgcaaaaaggcgtgtttaccaggttgtgagagcagatggtata
aaggtcagcactgataacaagggcacaccaacaaagaagaggaaagtggtacacaatagt
actgataagggaaaagaaaatgaaaatgaaggctccactgcagacaagcacagcattcag
aaggttaatgctgatgtgggcattgtgttgttagaggttttggaggaggcgccaaaatgg
aaagtgttacgggaattgttgcaagagatagcagaagaacagatgaagggagatcatgag
aatgcacaagatgaagatgaaagtggcatcgttttagtaacatgtaaagatgagcgcaca
tgctttcagctgcaagaatgcatatcaaaagacccccataaggttatgcgagaagagtgg
gagaagtatttgcttgggaaagctgagctgcatggattacagaaaaagaacaagaaaaaa
tctgagcaaccaaaagggtttggtatcctggatggggaagttcaaatggggcctaatgag
agtgcaggccctgttagcattagcaagcttgaaactaatgccttacttgcagctgcctct
gagttaagaaatataactaaggaagctgatgtcaaggatggttcaaatgtcagctgcact
agaagggagttggtaaagggaaaagcaaagggcaaatcaaagaaaaccactgaaaagaga
caaggcagcaatagaaaaaatagaagtaacgggggaaacgacaacaaccaagttactgct
gtggaggcaaaaggacaatcaagcaaaaccgatgaacatgccgatatcgatgcttctaag
gtgtccacagatgaagatttcatgttggcctctacttctggcggtgccagtaattattca
tctgattttagaggtttggcaaatggcaagccactacctcctgtgcaatttcatgccctg
gacagtgaccagcacatacttgacgtatggaagccatctaatatcattgtttaccatcca
gatataacctttgttagagaaattgaagtttacaaggcagaaaacccatcaaggaagtta
aaagtttactttcttttttacgaagattctaccgaggtgcaaaaatttgaatctagcatt
cgccgagaaaatgaagcatttgaatctttgataagacagaagtccctaatgatgatacct
gttgatcaggatggccactgcattggaccaactcttgcaaatgaaccggaaccccttttg
tgtcaaaactcaattacaagaaaggcaggtggtaaaagggcaccagagaaagagatgcag
gttattgtagacatgagagagttcatgagcagtcttcccaatgtactacaccagaaaggt
attcgtatagtaccggttacccttgaagttggtgactatgttctttctcctctgatctgt
gttgaacggaaaagtatcgcggacttgttccaaagctttgcttctggtcgtctgtacaat
caggttgagaccatgacacgttactacaagatcccagttcttctcatagagttctcgcaa
gataagagcttttcctttcagtctgcaagtgagattggggatgatgtctctccgacaaac
ataatctcgaagctttcattgctagtcctgcattttcctcggcttcgcatagtctggtca
cgcagcttgcatgctacagcggaaatatttgtatcacttaaaacaaaccaggatgaacct
gatgagaaaaaggccatcagagttggcgtgccatctgaggatgggattgtggaggatgat
gtgagggctgaaaattacaatacatcagccattgaattcttcagaaggcttcctggagtg
acggattcaaattatagagcaatcatggatggatgcaatagcttggcggagctgtccctg
cttccactagaagagctggcagggctaatgggcagtcagaaaggagcacggacgctcaag
gagtttctcgatgccaagtgcccaactatgctgtag

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