Panicum virgatum (switchgrass): 120647695
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Entry
120647695 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SR30-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120647695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120647695
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120647695
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Motif
Other DBs
NCBI-GeneID:
120647695
NCBI-ProteinID:
XP_039780492
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All DBs
Position
9K:complement(10686725..10694552)
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AA seq
260 aa
AA seq
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MAIWHYSISLDIPATAIMLKFRIGGDSFYGRILDIDLKIPPRPPGYAFVEFEDLRDADDA
IYGRDGYNFDDYRLRVELAHGGRGQSYSYDRSSSYSSTRRGGVSRRSDYRVMITGLPSSV
SWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYEDMKYAIRKLDDSLFRNAFSRAYI
RLREYDARSRSRSRSRSYSRSPGYSRSRSPKSVSRSPSPVDERSLSRSRSPVSSPSRGRS
ASRSPRSRCASRSRSPVRSD
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggctatatggcattactccatctcacttgacattcctgcaactgcaatcatgctaaag
ttcagaattggaggtgattctttttatggtcgaattttggatattgacctgaagatacct
ccaagacctcctggatacgctttcgttgagtttgaggacctacgtgacgctgatgacgca
atttatgggcgtgatgggtataactttgatgactacaggttgcgggttgaattagctcat
ggtggaagaggtcagtcttactcttatgatcgttctagcagctatagcagcacacgccgt
ggaggtgtttctaggcgctctgattaccgtgttatgatcacgggtttaccttcatcagta
tcgtggcaagatctgaaggaccacatgcggcgcgctggtgatgtttgtttctctgatgta
taccgtgaggccggagaaactattggaattgtggattatacaaactatgaagacatgaaa
tatgcgatcaggaagcttgatgactcactgttcaggaatgcattttctagggcgtatatc
agattgagggagtatgatgctagatcacgaagcagaagccgtagccgctcatactcgaga
agccccggttacagcaggagcaggagtccgaaatctgtttctcggtcaccatcacctgtg
gatgaaagatcgctatcaagatcccgatcccctgtctcttctccttctcgtggaagatct
gcaagcagaagcccgaggagcagatgtgcatcccgttctcgttctcctgtgagatctgat
tga
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