Panicum virgatum (switchgrass): 120648144
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Entry
120648144 CDS
T07260
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120648144
Enzymes [BR:
pvir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
120648144
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120648144
Prokaryotic type
120648144
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
120648144
NCBI-ProteinID:
XP_039780827
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Position
9K:complement(55154854..55158289)
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AA seq
412 aa
AA seq
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MRWESARKKRVVLRVGYVGTEYRAIESVLESAIFKAGGILESNYGKLQKVGWERSSRTDK
GVHSLATMISLKMEIPDRAWENDPDGISLASFINSNLPNNVRVFSILPAQRSFDVRRECL
YREYFYLLPAETIGIKDGCSSEEVQEHLSEFNSILKGFEGNHPFHNYTARAKYRKVLAGR
QRRVKGASSTLKSMSSEMGMEESSSEENTPSEHDEDLNISSMIDSGVCEDSCMNDIAKGS
ENRSSSGIQFVELTIYGVSFMLHQIRKMVGTAVAVKRGLLPKDIIELSLAKFSRIVLPIA
PSEVLILRDNSFCTKNKEGRIVRPGIQSISNSAEIRKGVEEFYKAALLPEIAKFLDPTMP
PWKEWVENLDRFASIQDSQLDEVREAYRIWKADYDRVKMARKSAEAAHKVDK
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgagatgggagtcggcgcggaagaagagggtggtgctccgcgtcggctacgtcggcacc
gagtaccgagccatcgagtcagtcttggaatctgccatcttcaaggcggggggcattctt
gagagtaattatggaaaactgcaaaaagttgggtgggagaggagtagccgaactgataaa
ggggtacactcgctggctacaatgatctcccttaaaatggaaatccctgatagagcgtgg
gagaatgatcctgatggcatatctcttgccagttttattaactcaaatttgccaaacaat
gtcagggtttttagtatcttgcctgcacaaaggagttttgatgtaaggagggagtgctta
taccgtgagtacttctatcttcttcctgctgaaactattggaattaaagatggttgtagc
tctgaagaagtgcaagagcacttgtcagagttcaacagcatactgaaaggtttcgaggga
aaccatccatttcataattacacagcacgtgccaagtacagaaaagttcttgcgggaaga
cagcgaagggtgaaaggtgcaagttcgacactgaagtccatgtcctctgaaatgggtatg
gaagaaagctcttctgaagagaacaccccttcagagcatgatgaagacctgaatatttca
tcaatgattgattctggtgtatgtgaagacagttgtatgaatgatattgccaaaggttct
gagaatcggagttcatcaggaattcaatttgtggaattgaccatatacggagtatccttc
atgctacatcagatccggaagatggttggaactgcggtggcagtgaagcgtggattacta
cccaaagatatcattgaactgtctctagcaaagttttctagaatagttctaccaatagct
ccatcagaagtcctgatccttagagataatagtttctgcacgaaaaataaggaagggaga
attgttcgccctgggatccagtcaattagcaattcggcggaaatcaggaagggggttgag
gaattctacaaggctgctcttctgcctgagatagcgaaattcttggacccaactatgccg
ccatggaaagaatgggtagagaacttggaccggtttgccagcatacaagattcacagctg
gatgaagttagggaggcctatagaatatggaaggctgattatgaccgagtgaagatggct
agaaagagtgctgaagctgctcataaggtggacaaataa
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