Panicum virgatum (switchgrass): 120648146
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Entry
120648146 CDS
T07260
Name
(RefSeq) E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120648146
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120648146
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120648146
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120648146
NCBI-ProteinID:
XP_039780828
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All DBs
Position
9K:complement(55347786..55350173)
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AA seq
452 aa
AA seq
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MAVYYRYKSGVETFSVPVPAPSVSVADLKSLILRTARHGHGRTRGRGQRESVALHDARTG
EEYTDGSALVPRNSTVLVRRVAGPPAETITVAPSPPPPKVTTRDGAPSGSAVTSTSSAED
EETRAISAVIDAAQLKWGDQHRSQGGRRYGHHGALEARAPPPAGYVCHRCRVPGHFIQHC
PTNGDPRYDLGRTPSTKINLPAPSPVAPIPEDGVPPELHCKICSKVMTDAVVASRCCFGS
FCDVCIRAQIAAKSRCVGGAQSRAADLIPNLTLRATIAKLLATSASGSGSVGTDNRKSSA
GSKHSAAASQEGSSHATAAAAGSDSGHSDGSASSTSKSAAAPAAREPVMKRTTAAESAEI
GAQAGYPEQYGYYGSPFGPACYDPFFGAAPWACDPYMYYGMPYGGGYTDVPAAPAGYHDG
CQGRKRMADGELQRHGEAGFKRRCGGRSEVAF
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtactaccgctacaagagcggcgtcgagacgttctccgtgcccgtgccggcg
ccatccgtctccgtcgccgacctgaagagcctcatcctgaggaccgcccgccacggccac
ggccggacgcgcggccgcgggcagagggagagcgtcgcgctgcacgacgcgcggaccggc
gaggagtacacggacggcagcgcgctcgtcccgcgcaactcaacggtgctcgtgcgccgg
gtcgccggcccccccgccgagaccatcaccgtcgcgccgtccccgccgccgcccaaggtg
acgacgcgcgatggcgcaccctcgggttccgccgtgacatcgacttcgagcgccgaggac
gaggagacaagggccatcagcgccgtcatcgacgccgcgcagctcaagtggggagatcag
caccggtctcaaggagggcgtcgctacggtcaccatggcgcactcgaggcgagggcgccg
ccgccggcagggtacgtctgccacaggtgccgtgtccccgggcactttatccagcactgc
cccaccaatggcgatccaagatacgacctgggacggacgccgtcgaccaaaatcaatctg
cctgctccgtcgccggtggccccgatccccgaagacggggtcccgccggagctccactgc
aaaatctgcagcaaggtgatgacggacgcggtggtggcctccaggtgctgcttcggcagc
ttctgcgacgtgtgcatcagggcccagatcgccgccaagtctaggtgcgtgggcggcgcg
cagtcccgcgccgccgacctgatccccaacctgacgctgcgtgccacgatcgccaaactg
cttgccacgagtgcctctggcagcggatcagtcggcacggacaaccggaagagctcggcc
ggcagcaagcatagtgccgccgcctcgcaggagggcagcagccacgccacggcggccgcc
gccggctcggactcaggacacagcgacgggagcgcgtcgtcgacgtcgaagagcgcggca
gctccggcggcgcgcgagccagtgatgaagcggacgacggcggcggagtcagcggaaatc
ggtgcgcaggccggctatcccgagcagtacggctactacggcagcccgttcggcccggca
tgctacgatcctttcttcggtgcggcgccatgggcgtgtgatccgtacatgtactacggc
atgccgtacggtggcggctatacggatgtccccgccgcgccggccggctaccacgatgga
tgccaaggaaggaagaggatggccgatggggagttgcagagacacggggaggctggtttc
aagagaagatgcggaggcagatcggaggttgctttctga
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