Panicum virgatum (switchgrass): 120648269
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Entry
120648269 CDS
T07260
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120648269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120648269
03009 Ribosome biogenesis [BR:
pvir03009
]
120648269
04131 Membrane trafficking [BR:
pvir04131
]
120648269
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120648269
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120648269
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120648269
Membrane trafficking [BR:
pvir04131
]
SNARE
SNARE associated proteins
Others
120648269
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120648269
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120648269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_33
AAA_14
AAA_22
CDC48_2
TIP49
NPHP3_N
RNA_helicase
AAA_17
AAA_28
nSTAND3
Mg_chelatase
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
Viral_helicase1
ABC_tran
NACHT
AAA_7
NB-ARC
AAA_24
Vps4_C
TsaE
Zeta_toxin
AAA_lid_PRS2_C
ResIII
DUF815
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
120648269
NCBI-ProteinID:
XP_039780928
LinkDB
All DBs
Position
9K:complement(67843687..67846171)
Genome browser
AA seq
799 aa
AA seq
DB search
MADDAAAASCSTATGTSKRAENRLVVEEAKVTTDEYNSICTLHPATMEKLSIYHGDVVLL
KGKRRRDTVCVALPDDECGEGKILIGEVARSNLRVRLADVVSVHPCHDARYGARVHVLPL
DDTVEGLSGDLFEAYLKPYFVDAYRPVRKGDLFLVRGGMMRSVEFKVVDIDPAVDYCIVA
NDTEIFCDGDPVRREDEESLDGVGYDDVGGMRKQLAHIRELVELPLRHPQLFKSIGVKPP
KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAP
SIIFIDEIDSIAPNRDKTHGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPALR
RFGRFDREIDIGVPDEVGRLEVLRVHTKNMKLADDVDLDVVAKDTYGYVGADLAALCTEA
ALQCIREKMDVIDLEDETIDAEVLSSMAITNDHLKTALAGTNPSALRETMVEVPNVSWAD
IGGLEGVKRELQETVQYPVEHPEKFEKFGMSPSMGVLFYGPPGCGKTLLAKAIANECQAN
FISVKGPELLTKWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGRAGDAGGAGD
RVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPVPDEASRLQIFK
ACLRRSPVAGDVDLGALARFTAGFSGADITEICQRACKHAIREDIEKDMERERQAKEMPE
DMAVDCAQEPAQIKAVHFEESMRFARRSVSDADIRKYQAFAQTLQQSRGFGNEFRFPKQP
QAPEPAATANADDEDDLYN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacgcagccgccgcgtcgtgctcaacagctaccggcacgagtaagagagcg
gagaaccggctggtggtcgaggaggcgaaggtgaccacggacgagtacaactccatctgc
accctgcacccggccaccatggagaagctctccatctaccacggcgacgtcgtcctgctc
aagggcaagcgccgccgcgacacggtatgcgtggccctgcccgatgacgagtgcggcgag
ggcaagatcctgatcggcgaggtggcccgctccaacctccgggtgcgcctcgccgacgtg
gtgtccgtgcacccgtgccacgacgcccggtacggggcgcgcgtccacgtcctgcccctc
gacgacaccgtcgagggcctctcgggggacctcttcgaggcctacctcaagccctacttc
gtcgacgcgtaccgccccgtccgcaagggcgacctcttcctcgtgcgcggcggcatgatg
aggagcgtcgagttcaaggtcgtcgacatcgaccccgccgtcgactactgcatcgtcgct
aacgacacggagatcttctgcgacggcgaccccgtcaggcgcgaggacgaggagagcctc
gacggcgtcggctacgacgacgtcggcgggatgcgcaagcagctggcgcatatcagggag
ctggtcgagctgccgctcaggcacccgcagctgttcaagtccatcggcgtcaagccgccc
aagggcatcctcctctacgggccgccgggctccggcaagaccctgatcgcccgcgccgtg
gccaacgagaccggggcattcttcttctgcatcaacggccccgagatcatgtccaagatg
gccggggagagcgagagcaacctcaggaaggcgttcgaggaggccgagaagaacgcgccc
tccatcatcttcatcgacgagatcgactccatcgcgcccaacagggacaagacccacggc
gaggtcgagaggcgcatcgtctcccagctgctcacgctcatggacgggctcaaggcgcgc
gcgcacgtcatcgtcatgggcgccaccaaccgccccaacagcatcgaccccgccctgcgg
cggttcgggaggttcgaccgcgagatcgacatcggcgtgccggacgaggtcggccgcctc
gaggtgctgcgcgtccacaccaaaaacatgaagctcgccgacgacgtcgacctcgacgtc
gtcgccaaggacacgtacggctacgtcggcgccgacctggccgccctctgcaccgaggct
gccctgcagtgcatcagggagaagatggacgtgatcgacctcgaggacgagacgattgac
gcggaggttctcagctccatggccatcaccaacgaccacctcaagactgccctcgccggc
accaacccgtcggctctgcgcgagaccatggtcgaggtgcctaatgtcagctgggcggac
attggcggcctcgagggcgtcaagcgggagctccaggaaaccgtgcagtaccccgtcgag
cacccggagaagttcgagaagttcggcatgtccccttccatgggagtgctcttctacggg
ccccctggctgcggcaagacgctgctcgccaaggcgatcgcgaacgagtgccaggccaac
ttcatcagcgtcaagggccccgagctgctgaccaagtggttcggcgagagcgaggccaac
gtccgcgagatcttcgacaaggcgcgccagtccgcgccgtgcgtcctcttcttcgacgag
ctcgactcgatcgcgacgcagcggggcggccgcgcgggggacgccggcggcgccggggac
agggtcctcaaccagctgctcaccgagatggacggcatgaccgccaagaagacggtgttc
atcatcggcgccaccaaccggccggacatcatcgactcggcgctgctccgccccggccgc
ctggaccagctcatctacatcccggtgccggacgaggcctcgcggctccagatcttcaag
gcgtgcctgaggaggtcccccgtcgccggcgacgtcgacctcggcgcgctggccaggttc
acggcgggcttcagcggcgccgacatcaccgagatttgccagagggcgtgcaagcacgcc
atccgcgaggacatcgagaaggacatggagcgggaaaggcaggccaaggagatgccggag
gacatggcggtggactgcgcccaggagccggcgcagatcaaggccgtccactttgaggag
tcgatgaggttcgcgaggaggagcgtcagcgacgcggacatccgcaagtaccaggcgttc
gcgcagacattgcagcagtcgaggggcttcggcaacgagttccgcttccccaagcagccc
caggcgccggagcctgctgccacggccaacgccgacgacgaggatgatctctacaactga
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integrated database retrieval system
