Panicum virgatum (switchgrass): 120648325
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Entry
120648325 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase UPL7-like isoform X1
KO
K10588
ubiquitin-protein ligase E3 B [EC:
2.3.2.26
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120648325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120648325
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120648325
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
HECT type E3
120648325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Motif
Other DBs
NCBI-GeneID:
120648325
NCBI-ProteinID:
XP_039780994
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All DBs
Position
9K:11800194..11809333
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AA seq
1157 aa
AA seq
DB search
MSVPPAGNRQVSLRGSSAREITRDALLQKVSEERQLRSHLRRAAAAALSIQRIWRRYYVI
RVVSEQLHEDWKLLMNQPNIDMTTQWISRKMLRPFLFFITQPSSWYEGQQSKTMESILTC
FKIVLNSINLTDASKNFCSFAVGMPEERSIWLYQAKKMISLCSFILARCDHSCCKDGSMV
DLTAIAMRLAVSLTDCKTWKSLKSESSTDASVETLIEYIGTCQSGTYNCVRQYIKCLGPH
VTSKKKSSATATDDHFLITASAITLALRPFHSKKAERGTDLNGASKEYFKLVLTIPYLCK
CMPPLLLPALKHISVLQPCLNIILISKDKIFEEIIKLEKSEVLAVDTTVIPCSGWALGNI
VNLATNHDDLSSSGCFIQGLDFCLYVDVVNCICQNLLENFEKSRGMSQSVGSIAFHAETS
VAEEGDDTNGSHSMRTLFMDLLKPIYQQWHLRKLLMLAKEDVSCSRGTNYDPTRLLKLSD
VVCFYYHMLRIFSSCNPSIGPLPILNMLAFSPGFLVDLWGALEMSIFGQAVQNLQETEHD
KQLSTSNSGEQVSSTRQRRNAKDAATKWANVLQKITGKSNDSEEGTMSDSILISKQSDDD
ALTLWDIEAMRHASEGIGKDLICMIYLFCAIYGHLLLVLDDIEFYEKQVPFTLEQQRKIA
SALNTFVYNSFVQNGGSYSKPLLDVAVRCLNLLYERDSRHKFCPISLWLAPARNGRIPIA
AAARAHEAAFGNFQGNNISGIPTRSSVLTTLPHVYPFEERVQMFREFIESDKASRRVTGE
ISGPGPGSIEIVIRRGHIIEDGYRQLNCLRSKLKSCIHVSFVSECGLPEAGLDYGGLSKE
FLTDLSKTAFSPEYGLFSQTSASDTSLIPSNSARLLDNGIDMIEFLGRVVGKALYEGILL
DYSFSPVFVQKLLGRYNFLDELSTLDPELYRNLMQLKHYEGDAEDLYLDFTVTEELGGKR
IVHELRPGGKSISVTNENKLHYVHAMADFKLNRQILPFANAFYRGLSDLISPSWLSLFNA
NEFNQLLSGGLQDFDVDDLRKNTKYTGGYTESSRTVKLFWEVIKGLKPTERCLLLKFVTS
CSRAPLLGFKYLQPSFTIHKVPCDVTLWASIGGQDVDRLPSASTCYNTLKLPTYKRSSTL
RSKLLYAISSNTGFELS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgccccctgccggcaaccgccaggtgtccctgcgtgggtcgagcgcgagggag
atcacccgtgacgcgctgctgcagaaggtctccgaggagcgccagctccggagccatctc
cgccgcgctgccgctgccgccctttccattcagcgaatatggagaaggtactatgtgata
agagtagtttcagagcagcttcacgaagactggaaactattaatgaaccagcctaacatt
gacatgacaactcaatggatatctagaaaaatgcttaggccatttcttttcttcattact
caaccatctagctggtacgagggacaacagagcaagaccatggaatctattttaacatgc
ttcaagattgtcttgaatagcataaacttaacggatgcaagcaaaaatttctgttccttt
gctgtgggtatgccagaagagagatctatttggctttatcaggcaaaaaagatgatttca
ctgtgctctttcattcttgccaggtgtgaccattcctgttgcaaggatggaagcatggtt
gacttgactgctattgctatgagattggctgtgtctttaactgattgcaaaacatggaaa
agcttaaaaagtgagagcagtacagatgcatctgtagagactttgattgaatatataggt
acatgccagagtggcacatataattgtgttaggcaatatataaaatgtcttggccctcat
gttacttcaaagaaaaaaagttccgcaactgcaacagatgatcattttctgattactgct
agtgcaattactctagccttgcgcccattccactctaagaaagctgagaggggtactgat
ctgaatggtgcttcaaaggaatacttcaaacttgtacttacaataccatatctgtgcaaa
tgcatgccccctctgctgttacctgctcttaagcacatttctgtgctgcaaccgtgtctc
aatattatactgatctccaaggataaaatatttgaagaaataataaaattggagaagtca
gaggttttagctgttgacactactgttattccttgctctggttgggctcttggaaatatc
gtaaatttagctaccaatcatgatgatttatccagttcagggtgcttcattcaagggcta
gatttttgcctatatgttgatgttgttaactgtatttgccaaaacttactggaaaatttt
gagaaaagcaggggaatgtctcagagtgttggtagtattgctttccatgctgagacatct
gttgcagaggaaggggatgataccaatggcagccacagcatgagaacattatttatggac
cttctgaagccaatttaccagcaatggcacctgagaaagcttctgatgttggcaaaggag
gatgtttcatgcagcagggggactaattatgatccaactcggctcctaaagttgtcagat
gttgtatgcttctactatcacatgctcagaattttctcatcgtgcaacccttctatcggt
ccgttgcctattctcaacatgcttgcattctctcctggatttcttgttgatttatggggg
gcactagaaatgtccatttttggccaagcagtccagaatttacaagaaacagaacatgat
aaacagttgtctacaagtaattcaggtgagcaagtatcctccactaggcaaagaaggaat
gccaaggacgcagcaaccaagtgggcaaatgtgctccagaagattaccggaaaatccaat
gattcagaggagggcacaatgtctgatagtattttaatttctaaacagtctgatgatgac
gcattaactttatgggatattgaagctatgagacatgcatctgaaggtattggaaaggac
ttaatttgcatgatctatcttttctgtgctatatatggacacctattacttgtgctagat
gatattgagttttatgaaaagcaggttccttttactttagagcagcagcggaagatagca
tccgcacttaatacatttgtatacaattctttcgttcagaatggtgggagctacagcaag
cctcttctggatgtagctgtcagatgtcttaatctactctatgaaagggacagtaggcat
aaattttgtccaatttctttgtggttggcacctgctagaaatggtcgaattccaattgct
gctgctgccagggcccacgaggcagcatttggtaattttcaaggaaataatatttcagga
attcctactcggagctctgtacttaccacattaccacatgtatatccctttgaagagaga
gtgcagatgtttagagaatttattgagtcagacaaagcatcgagaagagttactggtgaa
atatctgggcccggtccaggatcaattgagattgttattcgtcgaggccatataattgaa
gatggatataggcagctgaactgcctaagatcaaagttgaaatcttgcattcatgtatca
tttgtaagtgaatgcggtcttccagaagctggtttggactatggtggtctctcaaaggag
tttctaacagatctttctaagactgcttttagtccagagtatggactgttttcacaaaca
tcagcatctgataccagcttaattcctagcaattctgctaggcttttggataacggcatt
gatatgattgagtttcttggtcgagttgtcggcaaagcactctatgaggggattctgttg
gactattctttctcaccagtatttgtgcagaaacttcttggacggtataattttttggat
gaactatcaacacttgatcctgagctttacagaaatcttatgcaactaaagcactacgag
ggggatgctgaggatctatatttggattttactgtaactgaagagttaggtggcaaaaga
atcgtccatgagctgagacctggtggtaaaagtatatctgtcacaaatgaaaataagctg
cattatgttcatgcaatggcagattttaagcttaaccgtcagatacttccatttgcaaat
gcattttatagaggactcagcgatctcatttcaccatcttggctaagcctatttaatgcg
aatgaatttaatcagttactttcaggcggactgcaggattttgatgttgatgatctgcgg
aagaacaccaagtatactggtggttatactgagtcaagtcgaactgttaaactcttctgg
gaggtcatcaaaggattgaagccaacagagcgttgtttgctcctaaagtttgtgacgagc
tgttcacgagctccattacttggattcaagtatctgcagccttctttcacaatacataag
gttccatgtgatgtaacactttgggcttcaattggaggccaagacgtagaccgccttcca
tctgcttccacatgctacaatactctcaagcttccaacatacaagcggtcaagcacgcta
aggagcaagctgctgtacgccatcagctcaaatactgggtttgaactctcgtag
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