Panicum virgatum (switchgrass): 120648326
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Entry
120648326 CDS
T07260
Name
(RefSeq) putative multidrug resistance protein isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120648326
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120648326
04147 Exosome [BR:
pvir04147
]
120648326
04090 CD molecules [BR:
pvir04090
]
120648326
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120648326
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120648326
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120648326
CD molecules [BR:
pvir04090
]
Proteins
120648326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
AAA_22
AAA_16
ABC_ATPase
Zeta_toxin
AAA_15
AAA_21
DUF815
AAA_30
AAA_23
SRP54
APS_kinase
Motif
Other DBs
NCBI-GeneID:
120648326
NCBI-ProteinID:
XP_039781000
LinkDB
All DBs
Position
1K:complement(7456138..7461845)
Genome browser
AA seq
1248 aa
AA seq
DB search
MGKDGLPETAETKAAPALRSFASVFIHADGVDVALMVLGLVGAMGDGMSTPIMMLIASRV
FTDAGSGPDRLHQFRSRMNENARNLLILAAANWVMAFLEGYCWTRTAERQSSRMRARYLS
AVLRQDVEYFDLKTGSTSEVIASVSSDSLAVQDVLSEKVPNFVTNTTMFVGSYAVGFALL
WRLTLAGLPSLLLLVVPGFLYGRTLIGLARRIREQYTRPGAIAAQAMSSVRTVYSFVAED
STVARFSAALEESARLGIKQGVAKGVALGSEGISFAIFAFNVWYGTRLIMSHGYKGGTVY
AASASIVIGGSVLGQALSNVKYFAEASAAAERMLKIIRRVPKIDSESNAGEELARVAGEV
EFKDVEFCYPSRPENPVFKSFSLRVPAGHTVALVGSSGSGKSTAIALLERFYDPSAGQVT
LDGVDIRRLRLKWLRAQMGLVSQEPALFATSIKENILFGKEDATEEEVVAAAKAANAHNF
ITQLPQGYHTQVGEHGVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDTNSEHVVQEA
LELASMGRTTIVIAHRLSTIQNANTIAVMQSGEVKELGSHYELIANENGLYSSLVLLQQT
KESTDSEEVDGTRSTSLMRQSSSHGMSKRISTASGSIITLSMGNDEGNDNKTEPLKLPVP
SFIRLLMLNKPEWKQALMGSFSAIVVGGIQPTYAYAMGSMVSIYFLTDHEEMKDQTRIYS
LFFVGLALFSFLMNIAQHHNFGVMGEYLTKRIRERMISKILTFEIGWFDSDKNSSGAICS
QLAQDANVVRSLIGDRMSLVIQTASSVLIACIMSLAIAWRLALVMIFVQPIVIVCFYTRR
ILLKSMSKKSLQAQSECSKLAVEAVANLRTVTAFSSQDRILRLFDQAQVGPRKESIRQSW
FAGLGLGTSMSILRCVWALTFWYGGILMAQHHLTSKALFQTFLILISTGRVIADAGSMTT
DLAKGADSVTSLFSIIDRETEIDPDNPEGYKPENLEGKVDIREIDFVYPSRPDVIIFKGF
SLSIQPGKSTALVGQSGSGKSTIIGLIERFYDPLVGAIEIDGIDIKTYNLRALRKHIALV
SQEPTLFAGTIRENIVYGTETATEEEVVSAARYANAHDFITSLKDGYDTWCGERGIQLSG
GQKQRIAIARAILKNPAILLLDEATSALDSHSEMVVQEALDRILVGRTSLVVAHRLSTIQ
NCDVITVLEKGIVLETGTHASLMSKGSAGTYFGLVTMQQGHNQHIEFA
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggacgggctgccggagacggcggagaccaaggcagcgccggcgctgcggtcg
ttcgcctcagtgttcattcacgcggacggtgtggacgttgcgctcatggtgctgggcctg
gtgggcgccatgggcgacggcatgtcgacgccgataatgatgctcatcgccagccgcgta
ttcaccgacgccggcagcggccctgaccggctccaccaatttcgttccaggatgaacgag
aacgcaaggaatctcctcatcttggcagccgccaactgggtcatggcgttcctggaaggg
tattgctggacgcggacagcggagcggcagtcgtcgcggatgcgggcacggtacctgagc
gccgtgctccggcaggacgtggagtacttcgatctcaagaccggctccacgtcggaggtg
atcgccagcgtctccagcgacagcctcgctgtgcaggacgtgctgagcgagaaggtgccc
aacttcgtgaccaacaccaccatgttcgtcggcagctacgccgtcggcttcgcgctgctg
tggcggctcacgctggcggggctgccgtccttgctgctgctcgtcgtccccggatttctc
tacggccgcaccctcatcggccttgcacgccggatcagggagcagtacacgcgcccaggc
gccatcgccgcgcaggccatgtcgtcggtgcgcaccgtgtactcgttcgtggcggaggac
agcaccgtggcgcggttctccgccgcgctggaggagtcggcgcggctcgggatcaagcag
ggcgttgccaagggagtcgccctcggcagcgagggcatctccttcgcgatcttcgctttc
aacgtctggtatggcacccgtctcatcatgtctcatggctacaagggcggcaccgtctac
gccgcctccgccagcatcgtcatcggaggctcagtgctggggcaggcgctgtcgaacgtc
aagtacttcgcggaggcaagcgcggcggcagagaggatgctgaagataattcgtcgggtg
cccaagatcgactcggagagcaacgccggcgaggagctggccagggtcgccggcgaggtg
gaattcaaggacgtggagttctgctacccatcgcggcccgagaaccccgtcttcaagagc
ttcagcctgcgcgtgccggcggggcacacggtggcacttgttgggagcagcgggtcaggg
aagtcgacggcgatcgccctgctggagcggttctacgatccatcagcgggacaggtgacc
ctggacggcgtggacatccggcggctgcggctcaagtggctgcgcgcgcagatggggctg
gtcagccaggagccagcgctgtttgcgacgtccattaaggagaacatcttgttcggcaag
gaggacgcgacggaggaggaggtcgtcgccgcggcaaaggcggccaacgcccacaacttc
atcacccagctgccgcagggctaccacacgcaggtgggtgagcatggtgtccaaatgtcc
ggaggacagaagcaaaggattgctattgctagagcaatcataaagtcacccaagatcctt
ctccttgatgaagccaccagtgcattggacactaattcagagcatgttgtccaggaggcg
cttgaactggcctccatgggtcgaactacaattgtcattgcccatcgcctatccaccatc
caaaatgcaaatacgattgcggtcatgcagtccggtgaggtcaaggagctgggatcccat
tatgagctcattgccaatgagaatggactctactcatctcttgtcctccttcaacagacc
aaagagtcaacagattctgaagaggttgatggaacaagaagtacatctcttatgcggcaa
tcaagcagccatggtatgagcaagaggatatccacagcaagcggatcaatcataacacta
tccatgggtaatgatgaaggtaatgacaacaaaacagagccgttaaagcttcctgtgcca
tccttcataaggctattgatgcttaataaacccgagtggaagcaagcactgatgggaagc
tttagtgcaattgtggttggaggcatacaacccacgtacgcatacgccatggggagcatg
gtctcaatctacttcttgacggatcatgaagagatgaaggatcaaaccagaatctactca
ctgttctttgttggtcttgcattgttttcattcctgatgaatattgcacaacaccacaac
ttcggtgtcatgggggaatatctcaccaaaaggataagagaacggatgatttcaaaaatt
ctaacttttgagattgggtggttcgacagtgataagaactctagtggtgccatatgctca
caacttgcccaggatgccaacgttgtgagatcgctcattggtgatagaatgtcccttgtc
atccaaacagcttcttcagtgctaattgcctgcatcatgagtctcgcaattgcttggcgt
ttggcactagtgatgatttttgtgcaaccaattgtcattgtttgcttttatactcgtcgt
atcttactaaagagcatgtccaagaaatcattacaggcacaatctgaatgtagcaagcta
gctgttgaggcagtcgctaatcttcgcacagtaactgctttctcatcccaagaccgcatc
ctacgcctctttgaccaagcacaggtaggccctcgcaaggaaagtatcaggcagtcctgg
tttgctggtctggggctcggtacctccatgagcattttgagatgcgtatgggccctcacc
ttttggtatggtggaatactcatggctcagcaccaccttacttccaaggccctatttcaa
accttcttgattttgataagcacaggacgtgtgatagcagatgcaggtagtatgacaaca
gaccttgccaagggtgctgattcagtcacttcacttttttctattattgatagagagaca
gaaattgaccccgacaaccctgagggatacaaaccagagaatctcgaaggcaaggtggac
attagagaaattgattttgtgtatccatcaaggccagatgtgatcatcttcaaaggattc
tccttgagcatccagccaggtaagtcaacagctcttgttgggcaaagtggttctggcaag
tcaaccatcattgggcttatcgagcggttctatgaccctcttgtgggggctatagagatt
gatggcatagacatcaagacatataacctacgagccctgcgaaagcacattgcactggtt
agccaagaaccaacactttttgcaggtaccatcagagagaacattgtatatggcactgaa
acagccactgaggaagaagttgtgagtgcagcaaggtacgccaatgcacatgatttcatt
actagcctcaaggatggatacgacacatggtgtggtgagagaggtattcagttatcagga
ggtcaaaagcagcgcattgcgattgcccgtgcaatcttaaagaaccctgctatcttgcta
ttagatgaagcaacaagtgcattggatagccactccgagatggtggtacaggaggcactt
gacagaatattggtcgggaggactagtttagtggtcgcacacaggctcagcaccatccaa
aattgtgatgtgatcactgtgcttgagaaagggattgttctagagacaggcacacatgca
tccctcatgagcaagggttctgctggaacatactttggattggttaccatgcaacaagga
cacaatcaacatatagagtttgcatga
DBGET
integrated database retrieval system
