Panicum virgatum (switchgrass): 120648433
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Entry
120648433 CDS
T07260
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120648433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120648433
03041 Spliceosome [BR:
pvir03041
]
120648433
03032 DNA replication proteins [BR:
pvir03032
]
120648433
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
120648433
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
Sm proteins
120648433
U2 snRNP components
120648433
Complex B
U1 snRNP components
120648433
U4/U6.U5 tri-snRNP components
120648433
Complex C
U2 snRNP components
120648433
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120648433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
120648433
NCBI-ProteinID:
XP_039781394
LinkDB
All DBs
Position
1K:complement(524891..527022)
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNRNCQLDNITFTAKDGKVSQL
EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGLAVGVGRGRAVAMRARAAAGRGGG
PVGRGSAPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagcctcgggatcccggtgaagctgctgcacgaggcggcgggtcacgtcgtc
acggtcgagctcaagaccggcgaggtctaccgcggcgccatggtcgagtgcgaggacaac
aggaactgccagctcgacaacatcaccttcacggcaaaggacggcaaggtgtcgcagctg
gagcacgtcttcatcagggggagcagggtcaggttcatgatcatacccgacatgctcaag
aacgcccccatgttcaagcgcctcgaggccaggattaggggtaaaggcttagctgttggg
gttggccgcggccgtgcggtcgccatgcgcgctcgggctgctgctggtcgcggtggtggt
cccgttggacgcggcagtgcaccccctgtgaggaggtag
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