Panicum virgatum (switchgrass): 120649019
Help
Entry
120649019 CDS
T07260
Name
(RefSeq) protein DETOXIFICATION 56-like
KO
K03327
MATE family, multidrug and toxin extrusion protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120649019
Transporters [BR:
pvir02000
]
Solute carrier family (SLC)
SLC47: Multidrug and Toxin Extrusion (MATE) family
120649019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MatE
Motif
Other DBs
NCBI-GeneID:
120649019
NCBI-ProteinID:
XP_039781621
LinkDB
All DBs
Position
9K:395305..397094
Genome browser
AA seq
533 aa
AA seq
DB search
MSVCVYVQIKKGTACTRIHHISSPSLAPFPNYYLSRTSAIEFALHSGLAMAKPISAVAAE
VRAQRGIALPLIAMNLTWFAKLAVSTAFLGRLGDLELAAGTLGYSFANVTGFAVLTGLCG
AMEPICGQAHGARNVALLRRTLLMATLMLLAASVPIALLWARVDAVLLRLGQQPDIAAAA
RAYVLGLLPDLAVTSLLSPLRAYLSSQEVTLPTLVAAALGLALHIPLTVRLSARMGIRGV
AAAVWLSDLAVAAMLAAYVAAYELILRGRVRDTDTTTTSWLALLRLALPCCLNTCLEWWS
YEILVLLTGRLPDARRMVAVVAVTLNLDYLLFAGMLSLSVSASVRVSNELGAGDAALARR
AARVSVAGGAVAGVAGGLLMLAARRPWARLYTRSPEVRDGVARAMEVMAALEVVNFPLNV
CGGIVRGTARPLLGMYAVVAGFYVVALPVGVALGFKARLGLEGLLAGFLVGAAASLAVLV
AVIVRMDWAAEADKARRRAAGGGAIRDRDEDSNKHAAPAAPLSSDCNCNAAVC
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtatgcgtgtatgtccaaataaaaaagggaactgcttgcacacgcatccatcac
atttcctctccctcccttgctccctttccaaattattatctatcacgcacatcagcgatc
gagtttgcattgcattcggggcttgccatggccaaacccatctctgccgtggccgccgag
gtgcgcgcgcagcgcggcatcgccctccccctcatcgccatgaacctcacctggttcgcc
aagctcgccgtcagcaccgccttcctgggccgcctcggcgacctcgagctggccgccggc
acgctcggctacagcttcgccaatgtcaccggcttcgccgtcctcaccggcctctgcggc
gccatggagcccatctgcggccaggcgcacggcgccaggaacgtggccctcctccgccgg
acgctgctcatggccaccctcatgctcctcgccgcctccgtccccatcgcgctcctctgg
gcgcgcgtcgacgccgtgctcctgcgcttgggccagcagcccgacatcgccgccgcggcc
agggcctacgtgctcggcctcctcccggacctcgccgtcacctccctgctcagcccgctc
agggcctacctcagctcgcaggaggtgacgctgcccacgctggtggccgccgccctgggg
ctcgccctccacatcccactcaccgtccgcctctccgcgaggatgggcatccggggcgtg
gccgccgccgtctggctcagcgacctcgccgtggcggccatgctcgccgcctacgtggcc
gcatacgagctgatcctgcgcggccgggtccgggacacggacaccaccaccaccagctgg
ctcgcgctgctccggctggcgctgccctgctgcctcaacacgtgcctcgagtggtggtcc
tacgagatcctggtgctcctgactggccgcctccccgacgcgcgccgcatggtggccgtc
gtcgccgtcacgctcaacctggactacctcctcttcgccggcatgctgtccctgtccgtg
agcgcctccgtgcgcgtgtccaacgagctgggcgccggggacgcggccctggcgcgccgc
gccgccagggtgtcggtggcgggcggcgcggtggccggcgtggcgggcgggctgctcatg
ctggcggcgcggcggccgtgggcgcgcctgtacacgcgcagcccggaggtccgcgacggc
gtggcgagggccatggaggtgatggcggcgctggaggtggtcaacttccctctcaacgtg
tgcggcggcatcgtgcggggcacggcgcggccacttctgggcatgtacgcggtggtcgcc
ggcttctacgtggtggcgctgccggtgggcgtggcgctggggttcaaggcccgcctcggg
ttggagggcctcctggcgggattcctggtgggcgccgccgcgagcctggcggtgctggtg
gcggtgatcgtgcgcatggactgggcggcggaggcagacaaggcgcggaggcgggccgcc
ggcgggggcgccattcgcgatcgcgacgaggacagcaacaagcacgccgcgcccgccgcg
ccgctatcgtcagactgcaactgcaatgctgcagtttgttaa
DBGET
integrated database retrieval system
