KEGG   Panicum virgatum (switchgrass): 120649023
Entry
120649023         CDS       T07260                                 
Name
(RefSeq) transducin beta-like protein 2 isoform X1
  KO
K23325  transducin beta-like protein 2
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03012 Translation factors [BR:pvir03012]
    120649023
Translation factors [BR:pvir03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    120649023
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_2nd Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_HPS5 NBCH_WD40 Beta-prop_VPS8 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_Vps41 WD_LRWD1 Lactonase Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Nucleoporin_N Beta-prop_WDR41 DUF7899 Beta-prop_IP5PC_F DRMBL
Other DBs
NCBI-GeneID: 120649023
NCBI-ProteinID: XP_039781628
LinkDB
Position
9K:complement(430392..434737)
AA seq 445 aa
MAASLVSSLTLPLISAVLGGAIALVFLAGYLRRKRAAIAHIPPSAPNAAPDQPKRVRPSN
QAQHKKGHPRPHHNAADKDAAKKHHHLDVNTLRGHTDSVTALHFSNDGANLSTVCADGAV
RVFRIDDTSSKSFKILRINLPAGAHPTGVAFSEGSSSVVVAAQALLGSSFYMYADVSAPP
TVQNKQQGKLSPPEIKWSHQKIHGKESVLNLAAAHATHGPGDGSTIIISCSEATDIKVWH
GKSGKELGTVDTNQLKNNMADISPNGRFIAAAAFTADVKVWEIVYSKDSSVKEVNKVMQL
KGHKSAVTCLCFAPTSEQIITASKDGSIRVWNINVRYHLDEDPKTLRVLPIPLHDSKGSV
CQYDHMSISPDGKVLAVTSESTLQWLCVETGAVLDTAEKAHEGHITGIAWAPRKISNGGV
PAFILGTAGVDKKVKLWLAPQVGST
NT seq 1338 nt   +upstreamnt  +downstreamnt
atggcggcgtcacttgtctcctcgctcacgttgcccctcatctccgccgtcctcggtggc
gccatcgccctcgtcttcctcgccggctacctccgccgcaagcgcgccgccatcgcccac
atccctccctccgcccccaacgccgccccggaccagcccaagcgcgtccgtccctccaac
caggcccagcacaaaaagggccatccccgcccgcatcacaacgccgccgataaggatgct
gccaagaagcaccaccatcttgatgtcaacaccttgagggggcacactgactcagtcacc
gcacttcacttctccaatgatggcgccaacctatccaccgtgtgtgctgatggagctgta
agggtattcaggattgatgatacctcaagcaagagctttaagattctgaggataaacttg
cctgctggagcacatcctaccggtgttgctttctcggagggctcttcatctgttgttgtg
gcagcacaggctcttctgggctcatctttctatatgtatgcggatgtcagtgctcctcca
acggtccaaaacaagcagcagggcaagctatctccgcctgagatcaagtggagtcaccaa
aagattcatggaaaggagtcagtgctcaaccttgcagcagcccatgcaactcatgggccc
ggagatgggagcactataattatttcgtgctcagaagcaaccgatatcaaagtttggcat
gggaagagtggaaaggagttgggtactgttgacaccaatcagctaaaaaataatatggct
gacatatccccaaatggtcgcttcatagctgctgcagcttttactgctgatgtcaaggtg
tgggagatagtttactcaaaagatagttctgtgaaagaggttaataaagtcatgcaactc
aagggtcacaagagtgctgttacttgtttgtgctttgccccaacttctgagcaaattatc
actgcatccaaagatggttccattcgagtatggaacattaatgtaaggtatcaccttgat
gaggatccaaaaaccttaagagttttgccaattccactgcatgactcaaaaggttcggtt
tgccaatatgatcacatgagcatctctcctgatggtaaagttctggctgtaacaagcgaa
tcaacgttgcaatggttatgtgtggaaactggtgcagttttggatactgctgagaaagct
catgaaggtcatataactggcattgcttgggctccacggaaaatttccaatggtggcgtg
cctgcatttattttggggactgctggtgtggacaagaaggtgaaactttggttagctcca
caagttggttcgacatga

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