Panicum virgatum (switchgrass): 120649040
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Entry
120649040 CDS
T07260
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80-like
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120649040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120649040
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
120649040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
VWA
PH_PLEKHM2
Motif
Other DBs
NCBI-GeneID:
120649040
NCBI-ProteinID:
XP_039781643
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Position
9K:complement(552053..558980)
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AA seq
686 aa
AA seq
DB search
MARNKEALVLLLDVGPSMHGVLQEVKNICSTLVHKKLVYNRSDEVGIVLFGTKETCNELA
KELGGYKHVTVAHDIKVVDEGTSQALQNLPAGSVPGDFLDAIVVGLDMVIRKFGNTKGKR
RLCLITSAQYPLRDPPEGTKEDQVDTIADQMKRHDIKMECIVFREPGVHHNSVMEENDRL
LYQFRNRSVAKVVQVDSPTSLLGALKTRNVLPVTVFRGDLEVSPNFKIKVWVYKKTAEEK
FPTLKKYSDKAPPSDKFASHEVKVDYEYKSVVEPDKVVPPDQRIKGYLYGPQVVPISSAE
WEAVKFKPEKGVKLLGFTDRSSISRHHFMKDVCLFIPEPGNTKATLAVSAVARAMHQMNK
VAIVRCVWRQGQGNVALGVLTPNISSVNNVQDSFYFNVLPFAEDIREFQFRSLSSLPSSS
QPTEEQQEAADNLVKMLDLAPPGREVLKPEFTPNPMLERFYSYLDLKAKQPDANVPPLER
CLRRITEPDPDVIDQQTPLIQNLGKAFELKENPKKNKARTQERLAYVDAGDQAKSEAETS
AEKDGVLEALYPPSENAGQIRDLNPVQDFEAMLAKRSSSTWVQKAIEEMQKYTAALLENS
REGDNYQKALECFAALRKACIIEQEPEEFNQFLTKTYERLKGNAANFFQLLSSKNISLIS
KQEAPDSDVTEEMARSFYLKQEAASQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaacaaggaagcattggttttgctactggatgttggtccttcaatgcatggg
gtgctgcaggaggtcaagaacatatgctcaactctggtgcataagaagttagtttataat
agaagtgatgaggttggtattgtcctctttggaactaaagaaacatgcaatgagcttgcg
aaggagcttgggggctataagcatgtgacagttgcgcatgatattaaagttgtagacgaa
gggacatcacaggctctgcaaaaccttccagcaggatctgtccctggtgattttctggat
gctattgttgttggcttggatatggtaattaggaaatttggaaataccaaaggaaagcgg
cgcctctgtctaatcaccagtgcacagtatccgttaagagatccacctgaggggactaaa
gaagatcaggtggacaccattgcagaccagatgaaaagacatgatatcaagatggagtgc
attgtcttcagagaaccaggagttcatcataattctgtaatggaagaaaatgaccgacta
ttgtatcaattcagaaatagatcagtagcaaaggtagtccaggttgacagcccaacatcc
ctgttgggtgctctgaagacaagaaatgtgcttccagttactgtcttcaggggagacctg
gaagtgagccccaattttaaaattaaggtgtgggtctataagaaaacagccgaggaaaag
ttccccactttgaagaagtattcagacaaggcacctccgagtgataaatttgcctctcat
gaagtcaaagtggattatgagtataaaagcgttgttgaaccagacaaagttgttccacca
gatcagaggattaagggatatctttatggtcctcaagttgtcccgatatcatctgccgaa
tgggaggcggtcaagttcaagccagagaaaggtgtgaagcttctgggatttacagataga
tccagcatatcacggcaccattttatgaaagatgtatgcttgtttatacctgaacctggt
aacacgaaagcaactcttgcagtttccgccgtagcaagagcaatgcatcaaatgaacaag
gttgcaattgtgcgatgtgtgtggaggcaaggtcaagggaatgttgctcttggtgtattg
acaccaaacatttcatcagttaacaatgtccaagattcattttacttcaatgtgctccca
tttgctgaggacatcagagagtttcagttccgatccttgagcagtttgccatcatcatct
cagcccactgaagaacaacaagaagctgcagataacttggtgaagatgctagacctagca
ccacctggaagagaagtcctcaagcctgagtttacaccaaatcccatgttggagagattt
tacagttaccttgatctgaaggcgaagcagccagatgcaaatgtaccacctcttgaaaga
tgtctaaggaggataaccgaacctgatcctgatgtcattgaccaacaaacaccattaatc
caaaatctaggcaaagcctttgagctgaaagagaatcccaagaaaaataaggcacgaaca
caggagaggctggcatatgttgatgcaggtgatcaagctaaatcagaagcagagacctct
gcagagaaggatggggttttggaggctttgtatcctccatcagagaacgctgggcagatc
agagatttaaatcctgtccaagattttgaagccatgctggcaaagagatctagctcaact
tgggttcagaaggcaatcgaggagatgcagaaatacacagcagctttgttagaaaactca
cgtgagggggataattaccaaaaagcacttgaatgttttgctgccctgcggaaggcctgc
attattgaacaggaaccagaggaattcaaccagttcttaacaaagacttacgagagattg
aagggtaatgctgctaacttctttcagcttttgtcgtcgaaaaatatttcacttatcagc
aaacaggaagcgcctgacagtgatgtgactgaagagatggcaagaagtttctatctgaaa
caagaagcggcttctcagtag
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