Panicum virgatum (switchgrass): 120649126
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Entry
120649126 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120649126
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120649126
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120649126
03036 Chromosome and associated proteins [BR:
pvir03036
]
120649126
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120649126
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120649126
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120649126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Motif
Other DBs
NCBI-GeneID:
120649126
NCBI-ProteinID:
XP_039781760
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All DBs
Position
9K:complement(1142227..1146171)
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AA seq
519 aa
AA seq
DB search
MIKQFLGRLPKKPSKSGDKDPSGRSSPSVSHLPLGPRAGDRASNLSSQPPVISSSGLSYG
SGMHVGNANSRVNMNGDSVTSAFVSLPSFKDVPNTEKQSLFIKKLNLCCTQFDFTDPTKH
IKEKEIKRQNLVELVDYIGSASGKFSEASMQEITKMVSANLFRTLSTPPRESKVDGFDVD
EEEPVMDPAWSHLQIVYELFLRFIQSPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREY
LKMILHRVYGKFMVHRPYIRKAINNIFYQFIYETEKHNGIAELLEILGSIINGFALPLKE
EHKLFLVRALIPLHKPKCIAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPITNSSKE
VMFLGELEEILEATQPAEFQKCMVPLFRQIARCLNSSHFQVAERVLFLWNNDHIESLIKQ
NSRVIVPIIFPALERNTNGHWNQAVRSLTLNVRKLFSDHDSGLFTECMRKYEEEKAKEKE
VKSKQETTWKRLEEIASAKATSGAAVLVSRPLLRQSSAV
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgataaagcaattccttggacggctccctaagaagccgtccaaatctggagataaggat
cctagtggcaggtccagcccctcagtttcacacctgccattgggtccaagagctggagac
agggcgtccaatttgagtagccagccacctgttatctccagctctgggctcagttatggg
agtggcatgcatgtcggcaatgcaaactcgagggtgaacatgaatggcgattcagtcaca
tcagcctttgtgtccttaccaagttttaaggatgtgcccaacacagagaaacagagcttg
ttcatcaagaagttgaacttgtgctgcacccaattcgacttcaccgatccaacaaaacac
ataaaggagaaggaaataaagaggcagaatttggtggagctcgttgactatattggctca
gccagtggtaaattttctgaggcaagcatgcaggagatcacaaaaatggtttctgcaaac
ctgttcaggacactgagtaccccacccagagagagcaaagtcgatggatttgatgtggat
gaggaggagcctgtcatggaccctgcatggtcacacttgcagattgtttatgagttgttc
ctgaggttcattcagtctccagagactgacgccaagttggctaaaagatacatcgatcat
tcctttgttctgaggctacttgacctctttgattctgaagaccctagagaaagagagtac
ctaaagatgatccttcaccgtgtctatggaaagttcatggttcatcggccatatattagg
aaagccatcaacaacatcttctatcagtttatctatgaaactgaaaagcacaatggaatt
gcagagctattggagattttgggaagtatcataaatggatttgcattgcctcttaaggaa
gagcataaattgttccttgttcgagctttaattccacttcacaagccaaagtgcattgcg
atgtatcatcagcagttgtcttactgcatcacccagtttgttgaaaaggattgcaaactt
gcagacacagttatcagaggcctattgaaatattggcccatcacaaacagctccaaggag
gtgatgtttttgggagagttggaagagatattggaagctacgcaacctgcagagttccag
aaatgcatggtccctcttttccgccagattgcacggtgcctgaatagctcacactttcag
gttgctgagcgagtgttatttttgtggaacaacgaccatattgagagtttgatcaaacaa
aatagtagggttatagtgcctatcatctttcctgcactggagagaaataccaacgggcac
tggaaccaagctgttcgaagcctcactctaaatgttcgaaaacttttctccgaccatgat
tctggtctattcacggagtgtatgcggaaatatgaggaagagaaagccaaagagaaggag
gttaagtcgaagcaagagaccacatggaaaagacttgaagagattgcatcagcaaaagca
acaagtggagcggcagtgcttgtatctcgaccgttgctccgtcaatcttcagctgtgtag
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