KEGG   Panicum virgatum (switchgrass): 120649214
Entry
120649214         CDS       T07260                                 
Name
(RefSeq) flap endonuclease 1-B-like isoform X1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03030  DNA replication
pvir03410  Base excision repair
pvir03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120649214
   03410 Base excision repair
    120649214
   03450 Non-homologous end-joining
    120649214
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120649214
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120649214
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120649214
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    120649214
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     120649214
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     120649214
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120649214
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc 5_3_exonuc_N XPG_I_2 RHS_N
Other DBs
NCBI-GeneID: 120649214
NCBI-ProteinID: XP_039781881
LinkDB
Position
9K:1898928..1904665
AA seq 437 aa
MGIKGLTKLLAEHASRAAVQRRVEDYRGRVIAVDASLSIYQFLIVVGRKGSELLTNESSE
VTSHLQGMLNRTVRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRNDATKDLNRAIEIGD
EDLVEKFSKRTVKVTKKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASED
MDSLTFGARRFLRHLTDLGYKKSPVTEFEVSKVLEELGLSMDQFIDLCILSGCDYCENIK
GIGGQRALKLIRQHGCIEEVVQNLKQTRFNVPEDWPYQEVRTLFKEPNVCTEIPDFMWTS
PDSQGLMDFLSTENSFSPDRVAKAVEKITVARDKYSPGRLKLLTPVSSLPGSYTEKVQIL
NSMTLVFIICSSFLCRSHRFTLEPTCILGSPGQGLKIRSAPQVCNSSSSGLRYASSKPFM
LGMQSGFHGRPYAFSSL
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgggaatcaagggcttgacgaagctgctggcggagcacgcttcgagggccgcggtgcag
cggagggtggaggactaccgcggccgcgtcatcgccgtcgacgccagcctcagcatctac
cagttcctcattgtggttggaaggaaagggtcagagcttctgaccaatgagtctagtgaa
gtcacgagtcatctgcagggtatgttgaaccggacagtaagaatgctagaagcagggata
aagcctgtttttgtttttgatggcgagccacctgaaatgaagaaaaaggagcttgcaaaa
aggtccttaaagaggaatgatgctacaaaagatcttaatagagctattgagattggggat
gaggatttagttgaaaaatttagcaaaagaactgtcaaggtcacaaaaaagcacaatgat
gattgtaagaggctgttaagattgatgggtgtccctgtagttgaggcaccaggtgaggct
gaagcacagtgtgcagctctttgtgaaaatcaccaggtctatgctgtagcttcagaggac
atggactctctgacttttggtgctcgaaggtttcttcgtcacttaactgaccttggttat
aagaaatctcctgtgacagaatttgaagtgtcaaaggttttggaggaacttggactctca
atggatcagttcattgacttgtgtatccttagtggatgtgattactgcgagaatattaaa
ggtattgggggacaaagagccctgaaactcattcgacagcatggttgcattgaagaagtt
gtgcaaaatcttaaacagacgagattcaatgttccagaagactggccttaccaggaagtt
cggacattgtttaaagaacctaatgtttgtacagaaattccagatttcatgtggacctcg
cctgactcacagggccttatggatttcttgtcaactgaaaacagtttcagtcctgatagg
gtagcaaaggcggtagaaaagattactgttgcaagggataaatattccccaggaagattg
aagcttttgacaccagtttctagcttaccgggatcttatactgagaaggtgcagatctta
aacagcatgactttagtcttcatcatttgctcgtctttcctgtgccgtagccacagattc
acattggaacccacatgcatactaggctctccaggacaaggtctgaagatcaggtctgcc
ccacaagtgtgcaatagttcaagttctggcctcagatatgctagctcaaaaccatttatg
ctgggcatgcaatcaggattccatggaagaccttatgctttctcttccctctaa

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