Panicum virgatum (switchgrass): 120649315
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Entry
120649315 CDS
T07260
Name
(RefSeq) transcription elongation factor TFIIS-like isoform X1
KO
K03145
transcription elongation factor S-II
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120649315
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120649315
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GFIT
Motif
Pfam:
TFIIS_M
Zn_ribbon_TFIIS
Med26
HVO_0758
Motif
Other DBs
NCBI-GeneID:
120649315
NCBI-ProteinID:
XP_039782012
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Position
9K:2749735..2756847
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AA seq
397 aa
AA seq
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MERELLETFEAAKKAADAAAGEDDSPEADRCLDALRRLRDIRVNTDVLVATQVGKRLRHL
TKHPHSGIQAVATDLFGYWKKVVLEETGKKNGSSENERSSDSSGKIEKARPVKIERNSSS
SSMKVERSSDSSGKIEKARPVKIERNSSSASMKVEKRDVDVKGQRPDSVKIEKATSNGSK
AQPVKVERVSKEVSRTPDTKKTASVPTGPPKLTSLVKCNDATRDKIRELLAEAFSKVPAE
TSNDDRDEVRSILDQVNACDPFRVAVTVESALFEKLGRSTGAQKAKYRSIMFNLRADNNT
DFRRRVLIGQVRPERLPDIPPEEMASDARKQENKQIKAKAMFDCERGGAPKATTDQFKCG
RCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggagagggagctgctggagacgttcgaggcggccaagaaggccgctgacgcggcggcc
ggggaggacgactcgccggaggctgaccgctgcctcgacgccctgcgccggctgcgcgac
atccgcgtcaacaccgacgtgctcgtcgccacgcaggttggcaaacgtcttcggcacctt
actaagcaccctcactcgggcattcaggcagttgctacagacctttttgggtactggaaa
aaggttgttcttgaagagacaggaaagaaaaatggcagctcagagaatgagagatcaagt
gattcttcagggaagattgagaaggcgaggcctgtgaagattgaaagaaattcttcatca
tcaagcatgaaggttgaaagatcaagtgattcttcagggaagattgagaaggcgaggccc
gtgaagattgaaagaaattcttcatcagcaagcatgaaggttgagaaaagagatgtggat
gttaaaggtcagaggcctgacagtgtcaaaattgaaaaggccactagtaatggttccaaa
gctcaacctgtgaaggttgagagggtttccaaagaagtcagtagaactcctgatacaaag
aagacagcatctgtccccactggacccccaaagcttacatcccttgtcaaatgcaatgat
gctacccgagacaaaatccgggaattacttgctgaagctttctcaaaggttcctgcggag
actagcaatgatgaccgggatgaagtgaggagcatcttggatcaagtaaatgcatgcgac
ccatttagagttgctgtgacagtggagtccgcattatttgagaagcttggacgttctact
ggggcccagaaggcaaaatataggtcaataatgtttaacctgagagcagataacaacact
gatttccggagaagagttctcattggtcaagtgaggcctgagaggcttccagatataccc
cccgaagagatggctagtgatgcaaggaaacaagagaacaagcagatcaaggcgaaggct
atgtttgactgtgagcgcggaggagcgccgaaggcaacaactgatcagttcaagtgtggc
aggtgtggccaacggaagacaacttactatcagctccagactcggagtgccgatgaaccg
atgacaacatttgtgacatgcgtgaactgcaacaatcactggaagttctgttga
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