Panicum virgatum (switchgrass): 120649325
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Entry
120649325 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like isoform X1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120649325
04121 Ubiquitin system [BR:
pvir04121
]
120649325
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120649325
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
120649325
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120649325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
Zn_ribbon_19
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-RING_10
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120649325
NCBI-ProteinID:
XP_039782032
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All DBs
Position
9K:complement(2841836..2844402)
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AA seq
385 aa
AA seq
DB search
MDEGQEVRYWCHMCEEVIDPMPEMKCPSCEGGFVEEMDSEGFEPATNTRSDRSLSALAPL
LFGMLGGSSRRSRLRREAMEDVDADEDEDEDDSDRELELFNWRRRRRTPSASLVRLIQTI
RDDMRGLDDTDSDTERDMERERRERQAVERRMERQRAERQAVERRAERQRAMERLSNRGR
ERTESLILINSNNEAIILQGTFGRDDNQEESSNTSSGVSAADYFLGPGLDILLQRLAESD
LNRSGTPPAKKEAVAALPSVNIKEVLGCSVCLEDFEMGAEAKQMPCQHKFHSQCILPWLE
LHSSCPICRFQLPTEETKNPCESASSAGAMNGNGDNVAASSSDTESTTRNGDNHSDSPIF
SALSALFSDPSSSSDDESAPHSSET
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggccaggaagttaggtattggtgccacatgtgtgaggaggtgatcgatcct
atgccggaaatgaagtgccctagctgtgagggtgggtttgtggaagagatggactctgaa
ggctttgaaccagctacaaacacgaggtctgatcgctccctctctgctttggctccgctg
ctttttggtatgctggggggttcgtcgcgcagatcaagactcaggagggaggccatggag
gatgttgatgctgatgaggatgaggatgaggatgattcagaccgtgagctcgaactattc
aattggaggcggcgaaggaggacgccctcagcatcacttgtcaggctgattcaaactata
cgtgatgacatgaggggcttggatgacactgacagtgatacagagagagatatggagaga
gaaagaagggagagacaggctgtggagaggaggatggagaggcagagggcagagaggcag
gctgtggagaggagggcggagaggcagagggcaatggagagactgagcaatcgtgggaga
gagaggacagaaagcctaatactgatcaactccaacaatgaggccatcattctccaagga
acgtttggacgcgatgacaatcaagaggaatcaagcaacacaagttctggtgtatcagct
gcggattactttcttggtcctggcttagatattctgttgcagcgtttggcagagagtgat
ctcaatcgttctggcacaccacctgccaagaaggaggctgtagctgcattgccatctgtg
aacatcaaggaagtgttgggttgttcagtctgtcttgaggattttgagatgggagcagaa
gcaaagcagatgccctgtcagcataaattccactctcagtgcatccttccatggctggag
cttcacagttcttgcccaatctgtcgatttcagttgcctactgaggagacgaagaaccca
tgtgaatcagccagcagtgccggggccatgaacggcaatggagacaatgttgctgcaagc
agtagtgatacagaaagtactacccgtaatggagacaaccattcagatagtcctatcttc
tctgctttgagcgcactcttctctgatccatcctcatcatctgatgatgaaagtgctcca
cactcttctgagacctga
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