KEGG   Panicum virgatum (switchgrass): 120649442
Entry
120649442         CDS       T07260                                 
Name
(RefSeq) SEC12-like protein 1
  KO
K14003  prolactin regulatory element-binding protein
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120649442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120649442
Membrane trafficking [BR:pvir04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    120649442
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WD40 WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_Prp19 ANAPC4_WD40 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WDR90_beta-prop_4th Ge1_WD40 Beta-prop_CAF1B_HIR1 WD40_like Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 120649442
NCBI-ProteinID: XP_039782167
LinkDB
Position
9K:complement(3838060..3842279)
AA seq 368 aa
MAGNGGEGAVGKVTCAAWIRRRDDEGPPGVSRLLVAFGRGATASSPPLVDLLEFDAGASA
LASEPLARVVVGEEAADTPGAIAVHPGGRELVCATAKGCRVFKLVCRDFGIHLIPNDSLP
IQSVGPQKCLTFSTDGAKFAIGGEDGHLRIFHWPNLEVMLDEPKAHKSFRDMDISLDSEF
LVSTSIDGSARIWKINEGSPLINLTKSLDEKIECCRFSRDGTKPFLFCTLVKGHNILTMA
VDISNWKRIGYKRFSAKPISTLSVSLDGKYIALGNRDGDFCVVEVKTMEVAHWSKKVHLG
SPISSIEFCPTERVVISTSHQWGAEITKLDVPPEWKVWQIWLVLLSLFVSSAVLFYLFFK
HARLNLLP
NT seq 1107 nt   +upstreamnt  +downstreamnt
atggcggggaacggcggcgagggtgcggtcgggaaggtgacctgtgcggcgtggatacgg
cggcgggacgatgaggggccgcccggcgtcagccgcctcctcgtggcgttcgggcgcggc
gccacggcatcgtccccgccgctcgtcgatctcctcgagttcgacgccggggcctccgcc
ctcgcctccgagcccctggcgagggtcgtcgtgggcgaggaggcagccgacacgcctggc
gcgatcgccgtgcaccccggcggccgggagttggtctgcgccaccgccaaaggatgcagg
gtgttcaagctggtttgtagagatttcggtattcaccttattccaaacgattctttacct
atccaatctgttggccctcaaaaatgtttaacattcagcactgatggtgccaagtttgct
attggtggtgaggatggacatctcagaatatttcattggccaaatctcgaagttatgttg
gacgaacctaaagctcacaaatccttccgtgacatggacatcagcttagattcagaattt
ttagtttcgacatccattgatggttctgcgagaatatggaagattaatgaggggtctcca
ctgatcaatttgacaaaatctctggatgagaagattgagtgttgccgcttttctagggat
ggaactaaacctttcctgttttgcacacttgtaaaagggcataacattttgactatggct
gtggacataagtaattggaaaagaattggatacaaacggttttcagcaaagcccatttcc
acactatcagttagcttggacgggaaatatattgcactaggaaaccgtgacggcgacttt
tgtgtcgtggaagtaaagacgatggaggtcgctcactggagcaagaaggttcatcttggc
tctccaatttcttccattgaattttgccctactgaaagggttgtaatctccacctcacat
caatggggagcagagataacaaaacttgacgtccctcctgaatggaaagtgtggcaaatc
tggctggtactgctaagcctcttcgtgtcatctgccgtccttttctacctgttcttcaag
cacgcaagactcaacttgttgccctga

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