Panicum virgatum (switchgrass): 120649442
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Entry
120649442 CDS
T07260
Name
(RefSeq) SEC12-like protein 1
KO
K14003
prolactin regulatory element-binding protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120649442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120649442
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120649442
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WD40
WDR55
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Ge1_WD40
Beta-prop_CAF1B_HIR1
WD40_like
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
120649442
NCBI-ProteinID:
XP_039782167
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Position
9K:complement(3838060..3842279)
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AA seq
368 aa
AA seq
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MAGNGGEGAVGKVTCAAWIRRRDDEGPPGVSRLLVAFGRGATASSPPLVDLLEFDAGASA
LASEPLARVVVGEEAADTPGAIAVHPGGRELVCATAKGCRVFKLVCRDFGIHLIPNDSLP
IQSVGPQKCLTFSTDGAKFAIGGEDGHLRIFHWPNLEVMLDEPKAHKSFRDMDISLDSEF
LVSTSIDGSARIWKINEGSPLINLTKSLDEKIECCRFSRDGTKPFLFCTLVKGHNILTMA
VDISNWKRIGYKRFSAKPISTLSVSLDGKYIALGNRDGDFCVVEVKTMEVAHWSKKVHLG
SPISSIEFCPTERVVISTSHQWGAEITKLDVPPEWKVWQIWLVLLSLFVSSAVLFYLFFK
HARLNLLP
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaacggcggcgagggtgcggtcgggaaggtgacctgtgcggcgtggatacgg
cggcgggacgatgaggggccgcccggcgtcagccgcctcctcgtggcgttcgggcgcggc
gccacggcatcgtccccgccgctcgtcgatctcctcgagttcgacgccggggcctccgcc
ctcgcctccgagcccctggcgagggtcgtcgtgggcgaggaggcagccgacacgcctggc
gcgatcgccgtgcaccccggcggccgggagttggtctgcgccaccgccaaaggatgcagg
gtgttcaagctggtttgtagagatttcggtattcaccttattccaaacgattctttacct
atccaatctgttggccctcaaaaatgtttaacattcagcactgatggtgccaagtttgct
attggtggtgaggatggacatctcagaatatttcattggccaaatctcgaagttatgttg
gacgaacctaaagctcacaaatccttccgtgacatggacatcagcttagattcagaattt
ttagtttcgacatccattgatggttctgcgagaatatggaagattaatgaggggtctcca
ctgatcaatttgacaaaatctctggatgagaagattgagtgttgccgcttttctagggat
ggaactaaacctttcctgttttgcacacttgtaaaagggcataacattttgactatggct
gtggacataagtaattggaaaagaattggatacaaacggttttcagcaaagcccatttcc
acactatcagttagcttggacgggaaatatattgcactaggaaaccgtgacggcgacttt
tgtgtcgtggaagtaaagacgatggaggtcgctcactggagcaagaaggttcatcttggc
tctccaatttcttccattgaattttgccctactgaaagggttgtaatctccacctcacat
caatggggagcagagataacaaaacttgacgtccctcctgaatggaaagtgtggcaaatc
tggctggtactgctaagcctcttcgtgtcatctgccgtccttttctacctgttcttcaag
cacgcaagactcaacttgttgccctga
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