KEGG   Panicum virgatum (switchgrass): 120649523
Entry
120649523         CDS       T07260                                 
Name
(RefSeq) cullin-4-like
  KO
K10609  cullin 4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120649523
  09124 Replication and repair
   03420 Nucleotide excision repair
    120649523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120649523
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120649523
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120649523
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     120649523
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      120649523
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120649523
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120649523
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 Pox_VLTF3 DUF4778
Other DBs
NCBI-GeneID: 120649523
NCBI-ProteinID: XP_039782277
LinkDB
Position
9K:complement(4664369..4673062)
AA seq 830 aa
MSQPHAAPAASKRPFSSTTASPSPTSSPAPPLMKKAKHPAASSSSAGTTEKNGIHLDAAA
AASGGRTNGEEDTEMALADQDELPTPSAPGSAGVAANLFRKKATLPQPSTSSRKPLRIKI
GQPKLPKNFEEDTWAILKDAITAIFLKKKLSCDVEKLYQAAGDLCLHKLGASLYERIKKE
CEIHIAEKISALVGQSPDLVVFLSLIQRTWQDFCDQMLIIRGIALLLDVKYVKNVANICS
VWDMGLQLFRKHLSLSPEIEHKTVTGLLRLIESERLGEAIDRTLLSHLLKMFTALGMYSE
SFEKPFLECTSEFYATEGVKYMQQSDIPDYLKHVESRLQEEHERCILYLEANTRKPLIAT
TEKQLLERHTSAIIEKGFTMLMDANRINDLSRMYNLFQRVNAVELLKLALSSYIRATGQG
IIMDEEKDKELVPFLLEFKASLDKILEESFAKNEAFSNTIKDSFEHLINLRQNRPAELIA
KFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASID
AEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINDSFRQSSQARTKLPSGIEMSVHVLT
TGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKEL
AVSLFQSVVLMLFNDAQKLSFLDIKDSTGIEDKELRRTLQSLACGKVRVLQKIPKGRDVE
DKDEFVFNEEFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKV
LSHTLLIAELYQQLKFPVKPADIKKRIESLIDREYLERDRSNPQIYNYLA
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgtctcagccccacgctgcccctgccgcctcgaagcgccccttctcgtccaccaccgca
tccccctccccgacctcctcccccgcgccgccgctcatgaagaaggccaagcaccccgct
gcctcctcatcctctgcggggactaccgagaagaacggcatccaccttgatgccgccgcc
gccgcgagcggggggcgaacgaacggcgaggaggacacggagatggcgctcgcggaccag
gacgagctccccacgcccagcgccccgggctccgcgggtgtcgccgctaacctcttccgg
aagaaggccacgctcccgcagccgtcgacctcgtcccgcaagcccctccgcatcaaaata
ggtcaaccgaaactgccaaaaaacttcgaggaagatacatgggcgattttgaaggatgct
attacagctatttttctcaagaagaagctttcatgtgatgttgagaaactctatcaggct
gctggtgatctttgtctacacaagctaggagcaagcctatatgaacgaatcaagaaagaa
tgtgaaatacacatagccgagaaaatatcagcattagtgggtcaaagcccagatttggtt
gtatttttgtctctgatccaaagaacatggcaagatttttgcgatcagatgttgattatt
cgtggtattgctctacttcttgacgtaaaatatgtcaagaatgttgcaaatatttgttct
gtgtgggatatggggttgcagctgttccgcaagcatctatcactgtctccggagattgaa
cacaaaactgtaactggccttctcagattgattgagagtgagaggcttggtgaagcaata
gataggacattacttagccatcttctgaagatgtttactgctcttggaatgtattctgag
agttttgaaaagcccttccttgaatgcacttctgaattttatgctacggaaggtgttaaa
tatatgcaacaatctgatattccagactacctgaaacatgtggagtcgaggttgcaagaa
gaacatgaaaggtgtattttatatttggaagctaacacgaggaagccactgatcgcaact
actgaaaagcaattgctggaacgacacacatccgcaattattgagaaggggttcacaatg
cttatggatgcaaatcgtataaatgacctctcgaggatgtacaaccttttccagagggtt
aatgctgttgagctgctaaaactagctcttagttcatatatccgggctactggccagggc
attattatggatgaagagaaggataaagaattggttccattccttctggaatttaaggca
tccctcgataaaatattggaagaaagttttgccaagaatgaggctttctccaataccata
aaagattcgttcgagcaccttatcaatctacggcagaaccgacctgctgaattgatcgca
aagtttctcgatgagaaacttcgagctggtaataaagggacctcggaagaagagctggag
ggtatactcgacaaagttttggttctgtttcggtttatacaaggtaaagatgtatttgag
gcattctacaagaaggatctagctaagaggttgctgcttgggaagagtgcatcaatagac
gcggagaaatcaatgatcacaaaactcaaaactgagtgtggaagtcagtttacaaacaag
ctggagggaatgttcaaggacattgaattatccaaagaaataaatgattcgttcaggcaa
tcatctcaagctaggacaaagcttccctctggcattgaaatgagtgtccatgtgcttaca
acaggctattggcccacatatccaccaatggatgtgaaactcccgcacgaactgaatgtg
tatcaggatatatttaaagagttctatttgagcaagtacagtggaaggcgtttaatgtgg
caaaattctttgggacactgtgtcttgaaagcagactttcccaaaggcaaaaaggaactt
gcggtgtcattatttcagagcgtggttttgatgttgttcaatgacgcacaaaaactaagc
ttcctcgacatcaaagattccactggcatcgaggataaagaattgagaagaacactgcaa
tcacttgcatgtggtaaagttcgtgttctccaaaagataccgaaagggagggatgtagag
gataaggatgaatttgtattcaatgaagaatttagtgctccactctatcgcataaaggta
aatgctattcagatgaaggagacagtagaagaaaacacgagcaccactgagagagtgttt
caggatcggcagtatcaggtcgatgcggccattgttcgaataatgaagaccaggaaggtc
ctcagccacaccctactaatagctgaactttaccagcagctcaagttcccagttaagcca
gccgatatcaaaaaaagaattgagagcttgattgaccgggagtacctggagcgagacagg
agtaacccccagatctacaactacctggcttga

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