Panicum virgatum (switchgrass): 120649627
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Entry
120649627 CDS
T07260
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120649627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120649627
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120649627
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
NTP_transferase
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
120649627
NCBI-ProteinID:
XP_039782407
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Position
9K:complement(5787338..5789680)
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AA seq
280 aa
AA seq
DB search
MEQAEHEPRKLFVGGLPRLGVTQNSLRAHFARYGHVVEALVMQYPDGMGRGFGFVEFQDE
EATLRALDAREADAHNAFFGRKVDVKKAEKKQGTRSSLAQSSSNKLDADPKKIFVGGFGD
KITKDDMSGYFEKFGTVTDAVVCYDKLTRKARGFGFVTFDSKEAADKVLENQFHYLKGTK
VETTQAKPKSSMDSGGWGHRSPANDYGGMYSPHNRPFMPWNGPYLVPYPYVYPYLYPPPG
IINYGYMMSQTGTPAIQSDRGNQPPASLKSDPAKPDSNLL
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggcggagcacgagccccggaagctcttcgtcggcggcctgccgcggctgggg
gtcactcagaacagcctgagggcccacttcgcccgctacgggcacgtggtggaggcgctg
gtgatgcagtatccggacggcatgggccgcggcttcggcttcgtcgagttccaggacgaa
gaggcgacgctcagggcgctcgacgcgagggaggcggacgcgcacaatgccttcttcggc
cgaaaggttgatgtgaagaaagcagagaaaaaacaaggaacccgttcctcactggctcag
agcagttcaaataaactggatgctgacccaaagaagatctttgtgggtgggtttggtgac
aagatcaccaaagatgacatgtcaggttattttgagaagtttgggacggtaactgatgct
gttgtgtgttatgataaactaacaagaaaggcaaggggatttggatttgtcacattcgac
tctaaggaagctgcggacaaggttttggagaaccagtttcactatttgaagggaacaaaa
gtggaaacaacccaggctaaaccaaaaagttcaatggacagtgggggctggggtcacagg
agccctgctaatgactatggtggaatgtactcaccccacaacagaccatttatgccttgg
aatggcccttatctggttccgtatccatatgtatatccatacctatacccaccacctgga
atcataaattatgggtacatgatgagccaaacaggcactccagcgattcaaagtgatagg
ggaaatcagcctcccgcaagcttgaaatcagatccagcaaagccagattccaacttactg
taa
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