Panicum virgatum (switchgrass): 120649767
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Entry
120649767 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120649767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120649767
03012 Translation factors [BR:
pvir03012
]
120649767
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120649767
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120649767
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120649767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
ABC_tran
ATPase_2
AAA_16
NACHT
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
120649767
NCBI-ProteinID:
XP_039782581
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All DBs
Position
9K:7294654..7302005
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AA seq
1155 aa
AA seq
DB search
MRRSLRRGLGILLVPLPNAPSRPPPATLAALLLHPHRLNGFSRRSLCSFPSGGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNTEEQEIISRDRRDRRDYDPIANLAKRM
GLYSEMYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRTLLSLD
KSGGNTGISSEVAEKADNVNLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGFK
MLELRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNI
ICTQPRRISAMAVAERVSTERGESLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSD
RNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAP
TIHIPGFTHPVRAHFLEDILERSGYRLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTL
VEDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDI
SCLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKVVLATNMAEASITI
NDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVY
DAFADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVEFLKMIGAL
DGNENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPVLTVVAGLSVRDPFLLPQDKKDL
AGTAKSRFSSKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFS
YILKDSGLIDTDANVNNSLSHNQSLVRGIICSGLFPGIASVVHRESSMSFKTMDDGQVLL
YANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKML
DGYIDFFMDPSLSECYLQLKEELDKLIQQKLEDPNFDIHNEGKYILYAAQELAAGDLCEG
RFVFGRETSRARLRGPEEEGKSSLIKDGMNPKSLLQMLLMRAGHTPPKYKTKHLKTNEFR
AVVEFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKPQDEGDDDSPLDLTDSMLKL
LTRPRRHSKNSSRKR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcagcctgcgccgcggtctgggcatcctcctcgtcccgcttcccaacgcaccc
agccgcccgccgccagccactctcgcggctctcctcctccatccccaccgcctcaatggc
ttctcccgccgctccctctgcagcttcccgagcgggggccgcgccgtggagcagttctcc
gacgacgagtacgaccacgagtacgaggacctccggccgtcgtcgtcggtggcgaacatc
gacgagtggagatggaagctgagcatgctgcagcgcaacaccgaggagcaggagatcatc
tccagggaccggagggaccgccgcgactatgacccgatcgccaacctcgccaagaggatg
gggctctacagtgaaatgtacgggagggtcatcgtcgcgagcaaggtcccactgcctaac
tacaggccggacctggatgacaagcgaccgcaaagagaggtggtgatcccactgagcttg
cagaggagagttgaaggacttgttcaggagcatctagatcgtacactcttgtcactggat
aaaagtggtggcaacacgggaattagttctgaggtggctgagaaagctgataatgtgaac
ctggacgagcagcatgattctctgcttgataggtcagtcatggagaagatacttcagagg
aagagcattcggatgcgtaattttcagagaagttggcaggaatcaccagaaggttttaag
atgcttgagcttcggaaatcacttccagcatacaaggaaaaagaaagacttctagcagcc
attgcacggaatcaggtcatagtaatttctggggagacaggatgtggtaaaacaacacag
ctgcctcaatttgtattggagtcggaaatagagtctggccgaggggccttctgtaacata
atttgtacgcagccacgaagaatatctgcaatggcagttgcagaaagagtatccactgag
agaggagagagcctcggtgaatcggttggctataaagttcgattggaaggaattaaggga
aaggacacacatttgcttttctgcaccagtggcattttactaagacgattgctgagtgac
cgaaacttgaatggtgtgactcatgtatttgttgatgaaatacatgaaaggggcatgaat
gaagatttcctgttgattgtactgaaagatctattatcaaggcgccgtgatttgaggttg
atattgatgagtgctactctaaatgcggaactattctcaagttattttggaggagcccca
actatccacattcctggattcacacatccagtgagggcacattttctggaagatatattg
gagaggtcaggctacaggttgacctcaagcaatcaacttgatgattatggccaagataaa
gtctggaaaactcaaagacagctgctgcccagaaaaaggaaaaatcaaattactacactt
gttgaggatgccctgaaaaattcaagcttcgaaacatatggttccagaacgcgagattct
ctagcaaattggaatcctgactgcattgggttcaacctcatagaggctgttctgtgccac
atatgtcgcaaagagcgacctggtgctgttttagttttcatgaccggatgggatgatatt
agttgcttgaaggatcaactgaaagcacatccattgttaggtgatccaaatagggttttg
ctgcttgcatgccatggttctatggctactgctgagcagaggctaatatttgagaagcca
cctcctaatgtccggaaggtagtcctagccacaaacatggcagaagcaagtattacaata
aatgatatcgtttttgttgtggattgtggcaaagcaaaggaaaccacatacgatgcgtta
aacaataccccctgcttactcccctcatggatttcaaaagcttccgcccgccagaggagg
ggtagagctggccgtgtgcaacctggagaatgttatcatctctatcctagatgtgtgtat
gatgcatttgcagactatcagcttccggagcttcttagaactcctttgaattcattatgt
ttgcagataaaaagtttgcaagttggcagcattggggaatttttatcagctgctctgcaa
cctcctgaaccactagctgtccaaaatgctgtggaattcctgaagatgattggtgcatta
gatggaaatgagaacctcactgatcttgggcgatacctttccatgcttcccgttgatcca
aaattgggaaagatgcttataatgggtgcagtttttcgctgcatagaccctgtacttact
gtagttgctggactgagtgttcgggaccctttcctgttgccacaggacaagaaggatctg
gcaggaacagcgaaatcaagattctcatcaaaggattatagtgatcatatggcccttgtt
cgggcttatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctgg
agaaatttcctttctgctcaaacactacaagctattcactcacttaggaagcaattcagc
tatattttaaaggattctggtttgatagacactgatgcgaatgtaaataacagtttgagc
cataatcaatcattggtccgtggtatcatatgttctgggcttttccctgggatagcgtct
gttgtgcatcgagaaagctcaatgtcatttaagaccatggatgatggccaagttcttctt
tatgctaattcagtgaatgcaaagtaccagaccatcccgtatccatggttggtttttggt
gagaaggtgaaggtgaatgctgtcttcatccgtgattcaactggagtatcagactccata
ctgatcttatttggtggtgctgtcacaaaaggaagcatggctgggcacttgaagatgctc
gatggctacattgatttctttatggatcccagcctctctgaatgctacctgcaacttaaa
gaagaacttgataaacttatacaacagaagcttgaagacccgaactttgacatccacaat
gaaggcaagtacatcctgtacgcagcacaggagctcgccgccggcgacctatgcgagggc
cggttcgtgttcgggcgcgagacgagccgggcgaggctccgggggcccgaggaggagggc
aagagcagcctgatcaaggacgggatgaaccccaagagcctgctgcagatgctgctgatg
cgcgcggggcacaccccgcccaagtacaagacgaagcacctcaagacgaacgagttccgg
gccgtggtggagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcagctg
gcggagcgggacgccgccatcgaggcgctcgggtggctgacgcagacctccggcgtgaag
ccgcaggacgagggcgacgacgactcgccgctggacctgaccgacagcatgctcaagctg
ctcacgaggccgaggcggcactcgaagaatagctctaggaaacggtga
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