Panicum virgatum (switchgrass): 120649775
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Entry
120649775 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT4-like isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120649775
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120649775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
120649775
NCBI-ProteinID:
XP_039782591
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Position
9K:complement(7327107..7331273)
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AA seq
656 aa
AA seq
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MATVAPAPTVADQATNLMQKLSLESKKDGSSAAKKPSGLPYGSANAGDAQSAASQVDRSI
TPLLQEAMDPNFFYQPSGYASPAYYYPSGYDGSANEWDSRYAGHEGMEMPPQSVYGDMYH
GYGYAPYGPYPSGSPVPSAGHDVQSYVSQQYQYPTQYYQPPTSANSTHVVNGASSQPELP
SVVSQQTRVLVDATKASANGMPSANNSSLPHKQTHLNVPVANNGSYGRGPMQGGGPSASN
YGHSGLRSPAQWYDGPVYSNGHQRPTASSTSYRSNSSSVRNQSQRPTTNLTGMHAQMPSS
GMGLTSPSYPSRMCPDNRLFGQYGQYGNTLKGGLGFGSNVYNSRNNGRWGVVDTKYKPRG
RAPFGFAGENQDGFTELNRGPRSGGFKHQKQFGPTVTIVVKGQALPSPGKQNSTLPDKGQ
YNQEGFPVAYKDAKIFVIKSYSEDDVHKSIKYNVWASTPNGNKKLDAGYREAQEKSSDCP
VFLFFSVNTSGQFVGVAEMVGPVDFDKTVEYWQQDKWNGCFPLKWHIVKDVPNNILKHIT
LDNNDNKPVTNSRDTQEVKLEQGLEMLKIFKEHVSKTSILDDFGFYENRQKLMQEKRAKQ
QSLQGQMSDVSREKDKDATDGKPGAQKNVLSKDGALAEEVANASKPVAESGISNGN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgttgctcctgccccgaccgtggcagaccaggccaccaatctcatgcagaag
ctgtctctggagagcaagaaggatggctccagcgctgccaaaaagccttctgggttgcca
tatggatctgccaacgctggagatgcacagagtgctgcttcccaggtggacaggtcgata
actcctctactgcaagaggccatggatcctaacttcttctaccagcccagtggatatgcc
tctccagcctattactatcctagtggttatgatggctcagccaatgagtgggactcaagg
tatgctggtcatgaaggaatggagatgccccctcagagtgtgtacggcgacatgtaccat
ggatatggctatgctccatacggcccatatccttcgggttctcctgtaccaagtgctggg
catgatgtccagtcatatgtctctcagcaatatcagtacccgactcaatattatcagcca
ccaacctcagcgaattcaacccatgttgtaaatggcgccagttctcaacctgaactgcct
tctgttgtcagtcaacagacacgtgttttggtagatgcaacaaaagcaagtgcaaatggt
atgccgagtgctaacaacagctcgctgccacataagcagacccacctgaatgttccagta
gcgaataatggttcatatggaagaggacctatgcaaggtggtggaccttctgcaagcaat
tatggtcacagcggtcttcgttctccagctcaatggtacgatgggccagtttactcaaat
gggcatcaaagaccaactgccagttctacatcttaccgttccaattcatcttctgtgaga
aatcagagccagcgtccaacaacaaacctcacgggtatgcatgcgcagatgccttcgtct
gggatgggtctgacctcacctagctatccttctaggatgtgccccgacaacagattattt
ggacagtatggtcagtatggaaacacgctgaaaggtgggcttggtttcggatcaaatgtg
tataactcaagaaacaatggaaggtggggagtcgtagataccaaatataagcctagaggg
cgtgcaccttttggttttgctggtgagaatcaagatggctttaccgagctgaacagagga
ccaagatctggtggtttcaagcaccaaaaacagtttgggcctactgtcactattgttgtg
aagggccaggccctcccttcacctggaaaacagaacagcactcttccagacaaaggccaa
tataaccaggaagggtttcctgtagcctacaaggatgcaaaaattttcgttatcaaatca
tatagtgaagatgatgtgcacaagagtattaaatacaatgtgtgggctagcactcctaat
ggaaataagaagcttgatgctggataccgagaggctcaggagaaatccagtgactgccca
gtgttcttgtttttctctgtgaacacaagtggtcagtttgttggtgttgctgaaatggtt
ggccctgttgacttcgataagactgtggagtattggcaacaagacaagtggaatggttgt
tttccactcaagtggcacatagtcaaggatgtgcccaacaacatcttgaagcacattacg
ctggataacaatgataataagcctgttacaaacagccgcgacacacaagaggttaagctt
gagcaaggtcttgaaatgttgaagattttcaaagaacatgttagcaaaacctcaattttg
gacgattttggtttttacgagaatcgccaaaaattgatgcaggaaaagagagcaaagcag
caatcgcttcaagggcagatgagcgatgtttctcgagagaaagacaaggatgcaactgat
ggcaaaccaggggcacagaaaaatgtattgagtaaggatggcgctcttgctgaggaagtg
gcaaatgcctccaaacctgtagctgaaagtggcatatcaaatggcaactaa
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