Panicum virgatum (switchgrass): 120649787
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Entry
120649787 CDS
T07260
Name
(RefSeq) autophagy-related protein 16-like
KO
K17890
autophagy-related protein 16-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120649787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120649787
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120649787
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120649787
Others
Specific organelles associated proteins
Auto phagosome
120649787
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120649787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ATG16
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
WD40_like
Beta-prop_Nup120_160
Beta-prop_DCAF12
DUF6923
ZapB
Filament
Motif
Other DBs
NCBI-GeneID:
120649787
NCBI-ProteinID:
XP_039782611
LinkDB
All DBs
Position
9K:complement(7405089..7407934)
Genome browser
AA seq
507 aa
AA seq
DB search
MTMSEAEAGRAAIRRALRSLKRRHLAEEGAHRPAIEALTRPFAVHALEWKEKAEKHELEL
QQCYKAQSRLSEQLVTEIEEGKASKALLKEKEATVTSLQAELEKTSEENVQLKQSLDEKT
KALDLLIQEHQAVKAELEQALTKLKAAEDENQSLIDRWMLEKMKDAERLNEANAMYEEMV
LKLKTAGVGGIQHNAQQEADGIIRRSEAGYMETLIPSTCTITIRAHDGGCGSLMFEHNSD
KLISGGQDQTVKIWGAYTGALTTTLHGVLGSVNDLAVTNDNKFVVAACSSNKLFVWEVNG
GRPRHTLTGHTKNVSSVDASWVKSFVVASSSNDRTIKIWDLQTGFCKSTIMSASNPNSLA
FIDGDIICSGHRDGNLRLWDIRSGKCTTQIAARLDVTSVCVSRSKNFILTSGRDNVHNLF
DVRTLEVCGTFRATGNRVVGSFGKPCISPDENCIAAGSSDGSVYIWSRLKNEMPTVLEGH
SSPVLASAWCGLGPLATSDRNHIYIWS
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgtcggaggccgaggccggcagggcggcgatccggcgtgccttgcgctcgctg
aaacggaggcacctcgctgaggaaggggcgcaccgcccggccatcgaggcgctcacccgt
cccttcgctgtccacgctttggagtggaaggagaaggctgagaagcatgagttggaactg
cagcagtgctacaaagcgcaatcccggctgtctgagcagcttgtaaccgaaatagaagag
ggtaaagcatcaaaagcgctgctcaaagagaaggaagcaacggttacaagtttgcaggct
gaacttgagaagacgagcgaagagaatgtgcagctaaagcaatcacttgacgaaaaaaca
aaagccttagatcttcttattcaggagcaccaggcagttaaagccgaacttgagcaggca
ttaacaaaacttaaagctgcagaggatgagaaccagagtctgattgatagatggatgcta
gagaagatgaaagatgccgagaggctcaacgaggccaatgcgatgtatgaggagatggtt
ctaaagctaaagacagctggagttggtggtatacaacacaatgcacagcaagaagctgat
ggcatcatacggcgttctgaagctggttatatggaaacactaatcccatcaacatgcaca
atcactattcgtgctcatgatggtggatgtggatctttgatgtttgagcataactcagac
aagctaattagtggcggtcaggatcaaactgttaagatatggggtgcatatactggtgcc
ttgaccaccactctacatggtgtcttgggctctgttaatgatcttgctgtgaccaacgat
aacaagttcgtggttgctgcctgtagctccaataagctgtttgtgtgggaagtcaatggg
gggcgtcctcgtcacactctgactggtcacacgaaaaatgtttcttccgttgatgccagc
tgggtgaagagctttgttgttgcgagttcatccaacgatcgtacaatcaagatttgggat
ctccagacaggtttctgcaaaagcaccataatgtcagcaagcaaccccaactcactagct
ttcattgatggtgacatcatttgctcgggtcatagggatggaaatcttcggctatgggac
atccgtagtgggaaatgcactacacagatagctgctcgtcttgatgtcacctcggtctgc
gtgtcacggagcaaaaattttattcttacaagtgggagagataacgtgcacaaccttttt
gatgttagaacattggaggtttgtggaacattcagggccaccggtaacagagtggtgggc
agctttggcaaaccctgtataagccctgatgaaaattgcattgctgctggttcttctgat
ggatctgtttacatatggtcaagattgaagaatgaaatgccgaccgtcctagagggccat
tcttcgccagttctcgcaagtgcatggtgtggactaggaccccttgccacctcagacaga
aatcatatttatatctggtcttga
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integrated database retrieval system
