Panicum virgatum (switchgrass): 120649818
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Entry
120649818 CDS
T07260
Name
(RefSeq) DNA repair protein XRCC4-like
KO
K10886
DNA-repair protein XRCC4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120649818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120649818
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120649818
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GFIT
Motif
Pfam:
XRCC4
DUF4201
Jnk-SapK_ap_N
DUF3810
Motif
Other DBs
NCBI-GeneID:
120649818
NCBI-ProteinID:
XP_039782652
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Position
9K:complement(7798387..7801031)
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AA seq
276 aa
AA seq
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MAAATPAAAPRHSCAKLSVAVEDPKAAGAGAVFVRATWLPTRFSLAVTDGAGAWVADASD
AEVRLRAEQWDQPVAEYLALAERYLAFHQPDSTYSFHDAGKGNRRLSWTFERQGTKLEWR
WKLQPSPNTQQTIYEILDFLMDANIRLSEEVVRKTQSFDKLKQEAEKCLQQSERFNTEKA
EFEQATFSKFVAVLNSKKAKLRQLQDKVAELESADKPPKDDEEENSTDRTELFEEGSDKE
ASVNDEPSETGSGHSSPEKSAATSRGKDRGRKRAKK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccacccccgcggcggcgccgaggcacagctgcgcgaagctctcggtggcg
gtggaggaccccaaggcggccggcgccggcgcggtgttcgtcagggccacgtggctcccc
acccgcttctccctcgccgtcaccgacggggccggcgcctgggtcgccgacgcctccgac
gccgaggtgcgcctccgcgccgagcagtgggaccagcccgtcgccgagtacctcgcgctc
gccgagcgatacctcgccttccaccagcccgactccacctactccttccacgacgccggc
aaaggcaatcgcaggctgtcatggacatttgaaagacaaggtaccaagttggaatggcgt
tggaagctccagccatcacctaacacgcagcagactatatatgagatccttgatttcctt
atggatgcaaatattcgcttgagtgaagaggttgttaggaaaacacaatccttcgacaag
ttgaaacaagaagctgagaagtgcttgcaacaaagtgaaagatttaatactgagaaggct
gagttcgagcaagccaccttttcaaagtttgttgctgtcttgaattcgaagaaggccaag
ctcagacagctccaggacaaggttgctgaactcgaatcagctgacaagcctccaaaggat
gacgaggaggagaactcgacagaccgaacagagctattcgaggaaggaagcgacaaagag
gccagtgtcaatgatgaaccctccgagacaggcagcggtcatagctctcctgagaaatct
gcagccacctcccgaggaaaggatcgaggccgcaagagagcaaaaaaatag
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