Panicum virgatum (switchgrass): 120649837
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Entry
120649837 CDS
T07260
Name
(RefSeq) cyclin-H1-1-like isoform X1
KO
K06634
cyclin H
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120649837
09124 Replication and repair
03420 Nucleotide excision repair
120649837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120649837
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120649837
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120649837
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120649837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cyclin_C_2
Cyclin_N
TFIIB
Exo70_N
RB_B
Motif
Other DBs
NCBI-GeneID:
120649837
NCBI-ProteinID:
XP_039782671
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Position
9K:complement(8013245..8023135)
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AA seq
326 aa
AA seq
DB search
MADFRTSSHRERWIFQPHDLTERWAAANQRAAETLAQYGTTRLKVGPLDGSVHSPDHVEG
SSDVKPLSYEEEQLARVFYEQKIQEVCAAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKH
IMLTCVYTSCKVEENHVSAEELGKGIQQDHQIILDNEMILLKTLDFDLIVYAPYRSIEGF
VDDLEGFCRQDNSALQRLKELHQTAISYADKMMLTDAPLLYTPGQLALAALHKSNDILKV
FNFERYLETIFSRQHSDCTVEQFVQSIKSIHYLVDQLKIPTVKDMRHVDRKLKHCWDRSS
HDEHKKKEKKSKHKLKRTSTDAQLNG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttccggacctcctcgcatcgggagaggtggatcttccagccgcacgatctg
acggagaggtgggcggcggcaaaccaacgggccgcggagaccctcgcgcagtatgggacg
acgcggctgaaggtgggcccgcttgatggctcggtccattcgccggatcatgttgagggt
agctcggatgtaaagcctctgtcttatgaagaggagcaattggcacgagtattttacgag
cagaagattcaagaagtatgtgcagcattcaaattccctcacaaaatccaggctacagct
ataatatatttcaagagattctatctacagtggtctgttatggagcatcacccaaagcat
attatgttaacatgtgtatacacttcttgcaaagtggaagaaaaccatgtttctgctgag
gaacttggtaaaggaattcagcaggaccaccagatcattctagataatgagatgatcctt
cttaagaccttagattttgatctcattgtttatgcaccatatcgatctattgaaggattt
gttgatgacctggaaggtttctgcaggcaagataacagtgcattacagcgtttgaaggag
ttgcatcaaaccgcgatatcctatgctgacaaaatgatgttaaccgatgctcctcttctc
tatactccagggcagttggcactggctgctttgcacaagtccaatgatattctcaaggtc
ttcaattttgaaagatacttggaaactatcttctcaaggcaacattctgattgtacagtc
gaacagtttgttcagtcaatcaaatcaatccattacttggttgaccagcttaaaatacct
actgttaaggatatgaggcacgttgaccgcaagctgaaacattgttgggatcgaagctcg
catgatgagcacaagaagaaagagaaaaagtcaaaacacaaattgaaaaggacatcaact
gatgcccagctcaacggctag
DBGET
integrated database retrieval system