KEGG   Panicum virgatum (switchgrass): 120649837
Entry
120649837         CDS       T07260                                 
Name
(RefSeq) cyclin-H1-1-like isoform X1
  KO
K06634  cyclin H
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03022  Basal transcription factors
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120649837
  09124 Replication and repair
   03420 Nucleotide excision repair
    120649837
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120649837
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120649837
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     120649837
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     120649837
SSDB
Motif
Pfam: Cyclin_C_2 Cyclin_N TFIIB Exo70_N RB_B
Other DBs
NCBI-GeneID: 120649837
NCBI-ProteinID: XP_039782671
LinkDB
Position
9K:complement(8013245..8023135)
AA seq 326 aa
MADFRTSSHRERWIFQPHDLTERWAAANQRAAETLAQYGTTRLKVGPLDGSVHSPDHVEG
SSDVKPLSYEEEQLARVFYEQKIQEVCAAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKH
IMLTCVYTSCKVEENHVSAEELGKGIQQDHQIILDNEMILLKTLDFDLIVYAPYRSIEGF
VDDLEGFCRQDNSALQRLKELHQTAISYADKMMLTDAPLLYTPGQLALAALHKSNDILKV
FNFERYLETIFSRQHSDCTVEQFVQSIKSIHYLVDQLKIPTVKDMRHVDRKLKHCWDRSS
HDEHKKKEKKSKHKLKRTSTDAQLNG
NT seq 981 nt   +upstreamnt  +downstreamnt
atggcggatttccggacctcctcgcatcgggagaggtggatcttccagccgcacgatctg
acggagaggtgggcggcggcaaaccaacgggccgcggagaccctcgcgcagtatgggacg
acgcggctgaaggtgggcccgcttgatggctcggtccattcgccggatcatgttgagggt
agctcggatgtaaagcctctgtcttatgaagaggagcaattggcacgagtattttacgag
cagaagattcaagaagtatgtgcagcattcaaattccctcacaaaatccaggctacagct
ataatatatttcaagagattctatctacagtggtctgttatggagcatcacccaaagcat
attatgttaacatgtgtatacacttcttgcaaagtggaagaaaaccatgtttctgctgag
gaacttggtaaaggaattcagcaggaccaccagatcattctagataatgagatgatcctt
cttaagaccttagattttgatctcattgtttatgcaccatatcgatctattgaaggattt
gttgatgacctggaaggtttctgcaggcaagataacagtgcattacagcgtttgaaggag
ttgcatcaaaccgcgatatcctatgctgacaaaatgatgttaaccgatgctcctcttctc
tatactccagggcagttggcactggctgctttgcacaagtccaatgatattctcaaggtc
ttcaattttgaaagatacttggaaactatcttctcaaggcaacattctgattgtacagtc
gaacagtttgttcagtcaatcaaatcaatccattacttggttgaccagcttaaaatacct
actgttaaggatatgaggcacgttgaccgcaagctgaaacattgttgggatcgaagctcg
catgatgagcacaagaagaaagagaaaaagtcaaaacacaaattgaaaaggacatcaact
gatgcccagctcaacggctag

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