Panicum virgatum (switchgrass): 120649896
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Entry
120649896 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16-like
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120649896
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120649896
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120649896
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
120649896
NCBI-ProteinID:
XP_039782755
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All DBs
Position
9K:complement(8620870..8628261)
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AA seq
627 aa
AA seq
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MRRVKPTPEMEEEAEEVRQEVEGDGGAEWSPDAGAGGEEGAEEEEKEVGFDELGLDEQLK
RALRKKGIAKATPIQQEAIPLILEGKDVVAKAKTGSGKTFAYLLPLLHDLLKLSSEGRIC
KPAPNAFILVPTRELCQQVYNEASSLLEFCTSKLKVVQVTASMSDKDITVALSGPPNILV
STPACVATCISKGIMRGSSIKESLSMMILDEADLLLSYRCEDDLKALIPHIPRSCQSILM
SATSSSDVDKLTKLLLHNPFVLTLTEVGRAKDDVIPKNVQQFWISCDAKDKMLHILALLK
FELIQKKVLIFVNSIDAAFRLRLFLEKFGIRSAVLNAELPQNSRLHIIEAFNARLFDYLI
ATDDAKTKAEKQTDKENKKEARVSRKHWQQTLDAEFGVVRGIDFKNVFTVVNFDMPPDPA
GYVHRIGRAGRANKTGASVSLVSEEESSIFEDIEHMFQEVENKDTECISPFPLLTKDAVN
SLRYRAQDVARSVTTRDIQEARRQDIKNEILNSEKLKSHFEENPRDLDLLKHDKLLSNKE
IPAHLRDVPDYLIDPKTKEASNVVKLSRAAMGIDKPQRRKRQIFKGGSGKSRDPLRTFSA
EGKSRRRGRKDREGEQDRRKKSKKAES
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcgtgaagcccacccctgagatggaagaggaggcggaggaggtcaggcaggaa
gtcgaaggtgatggcggggcggagtggagcccggatgctggggccggcggcgaggagggg
gcggaggaggaagagaaggaggtgggcttcgatgagctgggcctggacgagcagctgaag
agggctctgaggaagaagggcatcgcgaaggcaaccccgatacagcaggaggccatcccg
ctcatcctggaagggaaggatgtggttgcaaaggcgaagactggctctggaaagaccttt
gcctaccttctcccattgctgcatgacctattgaagttatcctcagaaggccgtatatgt
aaacccgcaccaaatgccttcatcctggtgcctacacgagagttatgccagcaggtttat
aatgaggcatcatctctccttgagttctgtacatccaaattaaaggttgtgcaagtgact
gctagcatgtcggataaggatattactgttgcattgtctggccctcctaatattcttgtt
tcaactccagcttgtgttgcaacatgcatatcaaagggcattatgcgtggatcatcaatc
aaagaatctctttcaatgatgattctcgatgaggctgaccttcttctgtcctatcgctgt
gaggatgacttgaaagctctcatcccacatatcccaagaagctgtcagtccattctgatg
tctgcaacctcaagctctgatgtcgacaaattgacgaagctacttctgcacaacccattt
gttctaactcttacggaggttggtcgagctaaggatgatgtgatccccaaaaacgttcaa
cagttttggatctcatgtgatgccaaggataagatgcttcatatccttgcactcttaaag
tttgagcttattcagaagaaagttcttatatttgtcaactcgattgatgcagcattcaga
ttacgactgttcttggaaaagtttgggataagatctgcggtgttgaatgctgagttgcca
caaaattctcggctacatattatcgaggcattcaatgctagattatttgattatctgata
gcaacggacgatgctaaaacaaaggcggagaagcaaactgataaggaaaacaagaaagag
gcaagggtgtcccgcaaacattggcagcagactttagatgctgaatttggagttgtcaga
ggaattgacttcaaaaatgtattcacagtagttaattttgacatgccaccggatcctgct
gggtatgttcacagaataggacgagcagggagagcaaataagactggtgcatccgtatcg
cttgtttcagaagaggagagtagtatttttgaagacattgagcatatgtttcaagaagtt
gaaaataaagatacagagtgcatttcacctttcccactacttacaaaagatgctgtcaac
tctctacgatatagggctcaggatgttgcgaggagtgtgacaacacgtgatatacaggaa
gcacgtcgccaagacataaagaatgaaatcctgaattctgagaaattgaagtctcatttt
gaagagaatccaagagaccttgatttgctcaagcacgataagttgttaagcaacaaagaa
attcccgcgcacctacgtgacgttcctgactacctaattgatccgaaaacaaaagaagcc
agcaatgttgtcaaactttccagggctgctatgggtattgacaaaccccaaaggcggaaa
cgacagatattcaagggaggatctggcaaaagtagagacccccttaggactttttctgct
gagggcaaatcacggagacgaggcaggaaagatagagagggggagcaggatagaagaaaa
aagagtaagaaggcagaaagctga
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