Panicum virgatum (switchgrass): 120649917
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Entry
120649917 CDS
T07260
Name
(RefSeq) lariat debranching enzyme-like isoform X1
KO
K18328
lariat debranching enzyme [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120649917
03009 Ribosome biogenesis [BR:
pvir03009
]
120649917
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120649917
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
RNase
120649917
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DBR1
Metallophos
Metallophos_2
DUF5771
Motif
Other DBs
NCBI-GeneID:
120649917
NCBI-ProteinID:
XP_039782778
LinkDB
All DBs
Position
9K:complement(8993434..8999453)
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AA seq
411 aa
AA seq
DB search
MKIAVEGCMHGELDIVYDTLRRLEEAEGIKIDLLLCCGDFQAVRNTDDLRCVNVPLKYRT
MNSFWKYYSGQAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFSGVVKFGNIRI
GGLSGIHKQHNYHSGHYERPPYNEQTIRSVYHVRHYDVLKLMHLKEPLDIFLSHDWPLGI
TEYGNWQKLIRAKRHFEEEVNNRTLGSKPAAELLNKLKPPYWFSAHLHCRFPAIIQHGEN
GPTTKFLALDKCLPGRNFLQVIDIPSNPGPYEIQYDEEWLAITRRFNIIFLLTRRRFTIR
DEQLDTQDDREWVRNKLNTRGVKPFDFVQTAPSFNPSNPVSNSSITRSCRNPQTESFLQL
LELPYLLDSSNSEGVSSVNEVDRTESSSQPGNMLDDEDIELPDEDEGAIDE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgcggtggagggatgcatgcacggggagctggacatcgtctacgacacgctt
cgcaggctcgaggaggccgaggggatcaagattgacctcctcctctgctgtggcgacttc
caggctgttaggaatacagatgatttacggtgtgttaatgtcccactaaagtatcgtacc
atgaactcattttggaagtactactcaggacaagcagttgctccatacccaaccatcttt
atcggtggaaatcatgaagcatccaattatctgtgggaattgtactatggaggatgggca
gcacctaacatatactttttagggttttctggtgttgttaagtttggaaacatccgaatt
ggtgggctgtcaggaatacataagcaacacaattatcactcaggacactatgagaggcct
ccatacaatgaacagactatacggtctgtataccatgtaaggcattatgatgttctcaag
ctcatgcatttgaaggagccactagatatattcttatcacatgattggcctctgggcatt
accgagtatgggaactggcagaagctcattcgcgcgaaaaggcactttgaagaagaggtt
aacaatagaacgctaggtagcaaacctgcagctgaattactgaacaaactaaaaccaccc
tactggttttcagcacatttgcattgccggttcccagctatcatccaacatggagagaat
ggacctacaacgaagtttcttgcccttgataagtgccttcctgggcgaaattttttgcag
gttatagacattccgtccaatcctggaccatatgaaatccagtacgatgaagaatggctt
gcgataacaagaagattcaatatcattttcctcttaactcgaaggcgatttactattcgg
gatgagcagcttgacactcaagatgaccgagaatgggttcggaacaagttgaatactaga
ggggttaagccatttgactttgtccagactgcaccatctttcaatccttccaatccagtc
tccaattcctccattacaagaagttgcaggaatccacaaactgagtctttcctccagctt
ctggaactcccttatctgctggactcatctaattctgagggtgtgtcttctgttaatgag
gtcgatagaaccgagtcaagctctcagccaggaaacatgcttgatgatgaagatatagaa
ctaccggatgaagatgaaggtgccatagatgaatag
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