Panicum virgatum (switchgrass): 120649951
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Entry
120649951 CDS
T07260
Name
(RefSeq) phytochrome a-like
KO
K12120
phytochrome A
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120649951
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
PAS_10
Motif
Other DBs
NCBI-GeneID:
120649951
NCBI-ProteinID:
XP_039782827
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Position
9K:9385326..9393186
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AA seq
1130 aa
AA seq
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MSSSRPTQCSSSSSRTRQNSRARILAQTTLDAELNAEFEESGDSFDYSKLVEAQRSAPPE
QQGRSEKVIAYLQHIQRGKLIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDD
SPKLGIGTNVRSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLV
VDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEIFDLTGYDRV
MAYKFHEDEHGEVFAEITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSVK
IIEDEALSIDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPNSEQQSQ
QQQKKLWGLLVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIQEKSILRMQTM
LSDMLFREASPLSIISGSPNIMDLVRCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEV
HRDSTGLSTDSLQDAGYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHD
PSDKDDNRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDATKPAQTSG
LDNQIGDLKLDGLAELQVVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELTGLRVDE
AIGRHILTLVEDSSVSTVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASR
DLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIVHNPNPLIPPIFGADQFGWCSEWN
AAMTKLTGWHRDEVIDKMLLGEVFDSSNASCLLKNKDAFVRLCIIINSALAGDEAERAPF
GFFDRNGKHIECLLSVNRKVNADGVVTGVFCFIHVPSDELQHALHVQQASDQTAVRRLKA
FSYMRHAINKPLSGMLYSRQAIKSTGLNEEQMRQVHVADSCHRQLNKILSDLDQDNITDK
SSCLDLDMAEFVLQDVVVAAVSQVLIGCQGKGIRVSCNLPERFMKQKVYGDGIRLQQILS
DFLFVSVKFSPVGGSVDITSKLTKNSIGENLHLIDLELRIKHQGTGVPAEILAQMYEEDN
KEQSEEGLSLLVSRNLLRLMNGDIGHLREAGMSTFILTAELASAPAASGH
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctcaaggcctactcagtgttccagttcatccagcaggactcgccagaactca
cgagcaaggatattagcacaaacaacccttgatgctgaactcaatgcagagtttgaagaa
tctggtgattcctttgattactccaagttggttgaagcgcagcggagcgctccacctgag
cagcaagggcgttcagagaaggtcatagcctacttgcagcacattcagagaggaaagcta
atccaaccatttggttgcttgttggcccttgatgagaagagcttcagggttattgcattc
agtgagaatgctccggaaatgcttacaacagtcagccatgctgtgcctaatgttgatgat
tccccaaagctaggaattggtaccaatgtgcgctcccttttcactgacccaggtgccaca
gcactacagaaggcactaggctttgctgacgtttcattgctgaatcctatcctagttcaa
tgcaagacctcaggcaagccattctatgccattgttcatagggcaactggttgtctggtg
gtagattttgagcctgtaaaacctacagaatttcctgccactgctgctggggctttgcag
tcttataagcttgctgctaaagcaatctccaaaatccagtcactaccaggtgggagcatg
gaggccttatgcaataccgtggttaaggaaatcttcgaccttacaggttacgacagggtg
atggcttacaagttccatgaagatgagcatggggaggtctttgcggagattacaaaacct
ggtattgagccttatcttggccttcactatccagccactgatattcctcaagctgcaagg
ttccttttcatgaagaacaaagtacgaatgatctgtgattgtcgtgcaagatctgtgaaa
attattgaagatgaagcactctccattgatattagcttgtgtggttcaactcttagagca
ccacacagttgtcaccttcaatatatggagaacatgaactcaattgcatcccttgtcatg
gctgttgtggtcaatgaaaatgaagaggatgatgaacccaattctgaacaacaatcacag
cagcagcagaagaagctgtggggtctccttgtttgtcatcatgagagccccagatatgtc
ccgtttccactgaggtatgcctgtgaattcttagcacaagtgtttgctgtccatgtaaac
aaggagttcgaattggagaagcagatacaagagaaaagcattctacgtatgcaaacaatg
ctctctgacatgctattcagggaagcatctcccttgagtatcatatctgggagtccaaat
atcatggacctagttagatgtgatggtgctgctcttttgtatggggacaaagtatggcgt
cttcaaacggctccaactgagtctcagatacgtgatattgccttttggctttcagaagtt
catagggattccactggcttgagtactgacagcctccaggatgctggatatccaggagct
gcctcccttggtgacatgatttgtggaatggcagtggctaagatcacttccaaggatatt
cttttctggttcaggtcacatacagctgctgaaatcaaatggggaggtgcaaagcatgat
ccatctgacaaggacgacaacagaaggatgcacccaaggttgtccttcaaggcattcctt
gaggttgtcaagatgaagagtttgccatggaatgactacgagatggatgctattcactca
ttgcaacttatacttagaggtacactgaatgatgccacgaagccggcccagacatctggt
ttagataaccagattggtgatctcaaacttgatgggcttgctgaattgcaggtggtgaca
agtgaaatggttcgcctgatggaaactgcaactgttccaatcttagcagtagatggcaat
ggattggtcaatgggtggaatcaaaaggtagcggaattgacaggattgagagttgatgag
gctataggaagacacatacttacacttgtggaagattcttctgtatcaactgttcagagg
atgctatacttggctctgcagggcagagaagagaaggaagttcgatttgagttgaaaaca
catggctccaagagggatgatggccctgttatcttggttgtaaatgcctgtgccagtcgt
gaccttcatgaccatgttgttggggtgtgctttgtagcccaggatatgactgttcataag
ttggtcatggacaaatttactcgtgttgaaggggactacaaggcaatcgttcataacccg
aacccactcatccctcccatatttggtgctgaccaatttgggtggtgctctgagtggaat
gcagccatgaccaagcttaccgggtggcacagagatgaggtgattgataagatgctcctt
ggtgaagtttttgatagcagtaatgcttcctgccttttgaagaacaaagatgcatttgtg
cgtctttgcattatcatcaacagtgcattagccggtgacgaggcagaaagggctcccttt
ggcttcttcgatcgaaatgggaagcacattgagtgtcttctttcagtgaacagaaaagta
aatgcagatggtgttgtcactggagtgttctgtttcattcatgttcctagtgatgagctg
cagcatgcgctacatgtgcagcaagcctcggatcaaacagcagtgagaaggctgaaggct
ttctcatacatgcgacacgccatcaacaaacctctgtcaggtatgctttactctaggcaa
gcaatcaagagcacaggtctgaatgaagagcagatgaggcaggtccatgttgcagatagt
tgtcatcgccagctaaacaagatactttccgacttagatcaagataacattactgacaag
tcaagttgtttggatttggatatggctgaatttgtgttgcaagatgtggtggtggccgca
gtcagtcaagtactgataggttgccagggtaaagggatcagagtttcttgcaacctgcca
gagagattcatgaagcaaaaagtgtacggggacggtattcgactccagcagatcctctct
gacttcctatttgtttcggtgaagttctctcctgttggaggttctgttgatatcacttcc
aaactgactaagaacagcattggggaaaacctccatctcatagacctggagcttaggatc
aagcaccagggaacaggtgttccagcagaaatactagcacaaatgtatgaggaggacaat
aaggaacagtcagaagagggcttgagccttctagtttctagaaatcttctgaggctaatg
aatggtgacattggtcacctgagggaagctgggatgtcaaccttcattctcaccgcagaa
cttgcctctgctcctgccgccagtggacattga
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