Panicum virgatum (switchgrass): 120649971
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Entry
120649971 CDS
T07260
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120649971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120649971
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
120649971
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
DUF4837
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
120649971
NCBI-ProteinID:
XP_039782855
LinkDB
All DBs
Position
9K:9624421..9643773
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AA seq
996 aa
AA seq
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MVHSAYDAVELVAGVPGRIEAVASHAGKLLVAVSDSEGFLRGSDCSLRIYSSPASSPEGG
GEIRRDGPYALERHEQRFWRRPPLAMEVSASRDLLLSLSEWVALHRLPGLETVAVVSNKT
KGANVFAWDDRRGLLAVGRQKRLTVFRLDSGREFVEVKEFGVPDILKSMAWCGDNICLGI
RREYMIINSMTGALTDVFSSGRIAPPLVVPLPTGELLLGKDNIGVFVDQNGKLIQDGRII
WSDTPASVVIHRPYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVQTGNCILAALSNN
VCGLLPVPIGAQIVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDSGK
YEDAMEQFSNSHVDITYVLSLYPSIVLPQTHIIGEHDKLLDMPELATESSDVTDEMESYS
LQLHESDDKSPLEVKKMSHNALVALVKYLQKKRSGIIERATAEVTEEVVSGAVHHSLILS
EPYKPKKPNKKRAQTHTSSIAREMATVLDTSLLQALILTGQSSGAMELLKGLNYCDLKIC
EEFLKEWSDYMVLLELYKSNEMHREALQLLNQLVEKSKSEMENTDFNKKFNPQMIIEYLR
PLCRSDPMLVLESSLYVLERNPSETIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLS
MSETGINPNLQNELVQLYLSEVLDWYNILKEEGNWTEKTYSATRKKLISTLENNSGYNTD
LLLKRLPQDALFEERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKS
NIYFNLLQIYLNPRKAEKEFEQKIIPVASQYPGIHKSSSAKFKGGRTGKKVVEIEGADEI
RFSPSGTDSGRSDGDGDDANDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLV
SFLEPLLRNSSEHLRNYLVIKNLIFRANLQVKEDLYKRRQAVVKIDGNSMCSLCHKRIAN
SAFAIYPNGQTLVHFVCFRESQQIKAVRGANSMRRR
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagcgcgtacgatgcggtcgagctggtggccggcgtgccgggccgcatcgag
gccgtcgcctctcacgccgggaagctcctcgtcgcggtctccgactccgaaggctttctc
cggggctccgattgctccctgcgcatctactcctcgccggcctcctcccccgaaggcggc
ggcgagatccggcgggacgggccctacgcgctcgagcgccacgagcagcggttctggcgg
cgcccgcccttggccatggaggtcagcgccagccgcgacctcctgctctcgctctccgag
tgggtcgcgcttcaccgcctccctgggctcgagaccgtcgccgtcgtctctaacaagaca
aagggtgccaacgtcttcgcttgggacgaccggcggggcctccttgccgtcggtcgacag
aagcgcctcaccgtcttccgcctcgacagtggtcgagaatttgttgaagtgaaggaattt
ggagtaccagatattttaaaatcaatggcctggtgtggtgataacatatgcctaggaatt
aggagggagtatatgataataaacagtatgaccggggcactaacagatgtgttttcttct
gggaggattgctcctcctttagttgtacctcttcctactggggagctgctacttggcaag
gataacattggggtattcgttgatcaaaatggcaaacttattcaagacggcagaataatt
tggtcagacacaccagcttctgtcgttatacatagaccatatgctgtggcacgcctgcca
aggcatgttgagatacggtctcttagggcacccaatgcattggttcagacagttgtgctc
cgtgatgttcaaaagcttgtccaaactggcaactgtatacttgctgcgctatctaacaat
gtttgtggtttgttgcctgttcctattggtgctcagatagtgcaattgactgcttctgga
gaatttgaggaggcactagcgttgtgtaagctacttccaccagaggattcaaatttacga
gctgcaaaggaaagctcaatacacataagatatggacactttttgttcgatagtgggaag
tatgaggacgcaatggaacagttttcaaattcacatgtggacattacttatgtgttatct
ctgtacccatctattgttctgccacaaacacatattataggtgaacatgacaagcttctg
gacatgcccgaattagcaacggaatcctctgacgtgacagatgagatggaatcatactcg
ttacagctccatgaatcagatgataaatctccattggaggtaaagaaaatgagtcacaat
gctctagttgcccttgtgaagtatttgcagaagaaaagaagtggaataattgagagagca
acagctgaagtaacagaggaggtggtctctggagctgtgcaccacagcttgatattgtct
gagccgtataaaccaaagaagccaaacaagaaacgagctcagacacatactagctctatt
gctagagaaatggcaactgtactggatacttctctgcttcaagctcttattcttactggg
cagtcatcaggagcaatggaattgctgaaaggacttaattactgtgacctgaagatatgc
gaagaatttttgaaggagtggagtgactatatggtgttacttgagctctataaaagcaat
gaaatgcaccgggaagctctccaactgctcaatcagttagttgaaaaatcaaaatctgag
atggagaatacagattttaataaaaaatttaaccctcaaatgatcattgaatatctcagg
cccctttgtaggtctgatccaatgctggttttagaatcttccttgtacgtccttgaacgc
aatccatcagaaactattgaactctttttgtctgaaaatgttccagcagatttggtaaat
tcatatctaaagcaacatgctccaaatttgcaatcaacatatttagaattaatgctctca
atgagtgaaacggggatcaatcctaacctgcaaaatgagctggtgcaactgtacctttct
gaagttcttgattggtacaatattctgaaggaagagggaaactggacagagaaaacatat
tccgcaacacggaagaagttaatatctacattagagaataattcaggttacaatacagac
ttactccttaagcgtcttccccaggatgctcttttcgaggagcgtgccattttgtatggg
aagataaatcaacacctccgtgcactctctctgtatgttcacaagctccaaatgccagag
cgggcagttgcatattgtgaccgtgtttacgaggagggagcacaacaaccatccaagtca
aatatctattttaatcttctacaaatttatctgaatccaaggaaagctgaaaaggaattt
gaacagaaaattattccagtggcatcacagtaccctggaatccacaagtctagctctgct
aagttcaaagggggccgcacaggtaaaaaggttgtggagattgaaggggctgatgagata
cgctttagccccagtgggacagatagtggcagaagcgacggtgatggagatgatgcaaat
gatggaggccctataatgttgaatgaagcactggaactgttaagccaacggtgggacaga
ataaatggtgctcaggctcttaggctgttaccaagagacactaaactccaggatcttgta
tcatttcttgagccactattgcggaactctagtgaacatctacgcaattacttggttatc
aaaaacttgattttccgcgcaaacctgcaggtaaaggaggatctgtacaaacggcgtcaa
gctgttgtcaagattgatggaaatagcatgtgttctctttgccataagcgcattgcaaat
agtgctttcgcaatttatccaaatggacagacattggtgcattttgtctgctttagagaa
tcacagcaaattaaggctgttagaggagcaaactcaatgagacgtcgataa
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