Panicum virgatum (switchgrass): 120650081
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Entry
120650081 CDS
T07260
Name
(RefSeq) importin-5-like
KO
K20222
importin-5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120650081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120650081
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
120650081
Pre-60S particles
120650081
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
Importin_rep_4
Importin_rep_6
HEAT
TOR1L1_N
HEAT_2
HEAT_EF3_N
MMS19_C
Vac14_Fab1_bd
Cnd1
Htt_N-HEAT_1
TPR_TNPO3_IPO13_3rd
Adaptin_N
Arm
DNA_alkylation
HEAT_Maestro
RTP1_C1
Phasin_2
MIF4G
LTN1_E3_ligase_6th
ARM_ECM29_C
Motif
Other DBs
NCBI-GeneID:
120650081
NCBI-ProteinID:
XP_039783035
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All DBs
Position
9K:complement(10885366..10894418)
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AA seq
1111 aa
AA seq
DB search
MDPRAEADAAAVLGADPAALTALLADLTSPVNEARSRAEQQFHALRGSHPDALALSLAHL
LLSPAHPSAPIAAVLLRRLIAPSSQAFVYPALSPATQSSLRALLLSAASAPALPRSVSRK
LSDAVAELASYLLPANAWPDLLSFLYKSIDSQSSPPGLQESALNILARLASHLAAVFPNL
HGLLLAALSHPSSADVRVAGLNAAISLIQSLPSAGARDQFQDLLPAMMRALAESLNCGNE
GSAQEALEMMIELAGAEPRFLRRQLPDVVASMLQIAEAPGLEDGTRHLAVEFVVTLAEAR
ERAPGMMRKLPRYVGRLFAVLMTMLLDVQDEPAWHAAVPEEEDAGETGSYVFAQECLDRL
AIAVGGNTILPVAAELLPSFFSSEDWKRRHAALVTIAQIAEGSAKVMIKNLEQVVGMVLN
SFQDPHPRVRWAAINAVGQLSTDLGPELQNQLHHVVLPALASAMDDVQNPRVQAHAASAI
LNFSENCRPDILTPYLDGIVGKLLLLLQTGNQMVQEAALTALASAADSSQEHFQKYYDAV
MPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQVMEVLMTLQGSQMEA
DDPITSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVSVTSAGPEDEIGESDD
EGVETITLGDKRIGIRTSLLEEKATACNMLCCYADELKEGFFPWIDQVTTTLAPLLKFYF
HEEVRKAAISAMPELLRSAKLAIEKGQAQGRDKSYLKQLSDYIVPALVEVMHKEPEPQIC
ASILESLNESIQVSGTLLEENQVRSVVEGVKEVIVASANRRIERTARAKAEDFDSEEEEL
LREENEQEDEIFDQVGDCIGTLAKTFKTYFLPFFDELSMYLTPMLGKDRTSEERRIAICI
FDDVAEHCREAAIRYYDAYLPSLLEACTSENPDVRQAAVYGIGICAEFGGSAFRPHTGEA
LSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDSIDASQVIPAWLSCLPLKNDLI
EAKLVHEQLCAMLEKSERELLGHNNQYLPKIVSVFAEILCAGKDLATEQTSSKMVNLLRQ
LQTTLPPSVLASTWSSLQPQQQLALQSVLSS
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgggcggaggcggacgcggcggcggtgctgggcgctgacccggcggcgctg
acggcgctgctggcggacctgacctccccggtcaacgaggcgcggtcgcgggcggagcag
cagttccacgcgctccgcgggtcccacccggacgcgctcgcgctgagcctcgcgcacctg
ctgctctccccggcgcacccctccgcgcccatcgccgccgtgctgctgcgccgcctcatt
gccccgtcgtcccaggccttcgtctacccagcgctgtcgcccgccacgcagtcctcgctc
cgcgcgctgctcctctccgccgcctccgcgcccgcgctccccaggtccgtctccaggaag
ctctccgacgccgtcgccgagctcgcctcctacctcctgccggccaacgcgtggcccgac
ctgctcagctttctgtacaagtccatcgactcccagtcctcccctccggggctgcaggag
tcggcgctcaacatcctggcccggctggcctctcacctcgccgccgtcttccccaatcta
cacgggctcctcctcgccgcgctgtcccatccctcgtccgccgacgtccgtgtcgcaggg
ctcaatgcggccatcagcctcatccagtcccttccctccgctggggcccgcgaccaattc
caggacctccttccggccatgatgcgtgccctggccgagtcgctcaactgcgggaacgag
ggctccgcgcaggaggctctggagatgatgattgagctcgctggtgcagagccgcggttt
ctgcgccgtcagctgcccgacgtggtcgcctccatgctgcagattgccgaggccccggga
ttagaggacggcacccgccaccttgccgtcgagtttgttgttacactcgctgaggcacga
gagcgtgcgcctgggatgatgaggaagctgccacggtacgttgggcggctctttgcagtg
cttatgactatgctgctcgatgtccaggatgagccggcatggcatgccgctgtgccagag
gaagaagatgctggagagaccggaagctatgtcttcgcacaggaatgtctggaccggttg
gcaattgctgttggcggtaacaccattctgcccgttgcagctgagttgcttccatcgttt
ttctcctctgaagattggaagagacggcatgcagcactggtgaccatagcgcagattgca
gagggctctgctaaggtgatgattaagaatctggagcaggtggttgggatggtactgaat
tccttccaggatcctcatcctcgggtgaggtgggcagcaattaatgcagttgggcaactt
tcaacggatctgggacctgagttacaaaatcagctgcaccatgtcgtgctacctgcacta
gcttcagcaatggatgatgtccagaacccacgcgtacaggcacatgctgcatcagctatc
ctaaacttcagtgaaaactgtagaccggatattttgacaccatacctagatggaatagtt
gggaaacttctattgttgcttcagactggaaaccaaatggtgcaagaggctgctctaact
gctttagcatcagcagcagattcttcacaggaacacttccaaaaatattatgatgcagta
atgccatacctcaaggctattcttatgaatgcgactgataaatccaacagaatgttgcgt
gcaaaatccatggaatgcattagtttagttggtatggcagttgggaaacagaagtttaag
gatgatgctaagcaggtgatggaagttctcatgacactgcaaggatctcagatggaggct
gatgaccctataacaagttacatgctgcaagcatgggcaagactgtgtaaatgccttggt
caggatttcttaccatacatgagtgtggttatgccccctctgctccagtccgctcaactc
aaaccagatgtgagtgtcacttccgctggaccagaagatgaaattggtgaatctgacgac
gagggtgtcgagactattacactgggtgataagagaattggcatccggactagtctacta
gaggagaaagctacggcatgtaatatgctgtgttgctacgctgatgagctcaaggaagga
tttttcccatggattgatcaggttacaactacacttgcacctctcctcaagttctatttt
catgaagaagttaggaaggcagcaatttcagcaatgccagaacttcttcgttcagcaaaa
ttggctatagaaaagggtcaagctcaaggtcgtgataagtcttatcttaagcaactatct
gattatatagttccagcccttgtagaggtcatgcacaaagaacctgagccacaaatttgt
gcaagcatactggaatcattgaatgagtccatacaggtttctggaacacttcttgaggaa
aatcaagtaagatctgtagtggagggagtaaaagaagttatagttgcaagtgctaatagg
aggatagaacgaacagcgagggcgaaggctgaagactttgattctgaagaagaggaacta
cttagagaagaaaatgaacaggaggatgaaatttttgaccaagttggtgattgtataggc
actcttgctaaaacattcaagacttattttcttccgtttttcgatgaactctccatgtat
ttaacacctatgttgggcaaagatagaacatcagaagaaagaagaattgccatatgcatt
tttgatgatgtcgctgagcactgccgtgaagcagcaattaggtattatgatgcatatctt
ccttctctattagaagcctgcacaagtgaaaatccagatgtgaggcaggctgcagtttat
ggaattggcatttgtgctgaatttggcggttctgcatttagacctcacactggggaggcc
ctatccagattatacaatgtaatcaaacatcctaatgcgctggatttggataacgcgatg
gcatatgacaatgctgtttctgctcttggaaagatatgtcaatttcatcgtgatagcatc
gatgcatctcaggtcattcctgcttggttaagttgcctgccgttaaaaaatgatttaatt
gaggccaagcttgtccatgaacagctgtgtgcaatgcttgagaagtccgagagggagctt
ctgggtcataataatcagtaccttccaaagattgtatctgttttcgcagagattttatgt
gcggggaaagatctggcaacagaacagacctccagcaagatggttaatctactaaggcaa
cttcagacaacattgcctccttcagtattagcttcaacatggtcttctttgcaaccacaa
caacagcttgctttacagtccgtgctgtcatcatag
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