KEGG   Panicum virgatum (switchgrass): 120650143
Entry
120650143         CDS       T07260                                 
Name
(RefSeq) ras-related protein Rab5A
  KO
K07887  Ras-related protein Rab-5A
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04144  Endocytosis
pvir04145  Phagosome
pvir04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120650143
   04145 Phagosome
    120650143
   04148 Efferocytosis
    120650143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120650143
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120650143
   04031 GTP-binding proteins [BR:pvir04031]
    120650143
Membrane trafficking [BR:pvir04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    120650143
 Endosome - Lysosome transport
    120650143
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120650143
  Exosomal proteins of other body fluids (saliva and urine)
   120650143
  Exosomal proteins of colorectal cancer cells
   120650143
  Exosomal proteins of bladder cancer cells
   120650143
GTP-binding proteins [BR:pvir04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    120650143
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU RsgA_GTPase MMR_HSR1 Gtr1_RagA AAA_24 AAA_16 AAA_22 TsaE AAA_PrkA
Other DBs
NCBI-GeneID: 120650143
NCBI-ProteinID: XP_039783103
LinkDB
Position
9K:complement(12926461..12930589)
AA seq 203 aa
MAANAGNKIRNAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETV
KFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNLASFTRAKKWVQELQAQGNPNTIVA
LAGNKADMLDARQVPAEEAKTYAQENGLFFMETSAKTAINVNDIFYEIAKRLLQGQQDPS
PQAGMVLNQRPNERMVSSSSCCS
NT seq 612 nt   +upstreamnt  +downstreamnt
atggcggccaacgccggcaacaagatccgcaacgccaagctggttcttcttggagatgtg
ggcgctggcaaatctagtttggttcttcggtttgtgaaaggacagtttgttgaattccag
gaatcaacgattggagcagctttcttctctcagaccttggcggtcaatgatgagactgtt
aagtttgaaatctgggatactgctgggcaagagaggtaccatagcttggcacccatgtac
tataggggtgctgctgccgccatcgttgtctacgacattacgaatctggcctccttcact
cgtgcgaagaaatgggtccaagaacttcaagctcaaggaaacccgaatacaatagtggct
cttgctggcaacaaagctgatatgctagatgcaaggcaggtgccagcagaggaagcaaaa
acatatgcacaggagaatggacttttcttcatggagacatctgccaaaactgcgatcaat
gtgaatgacatattttatgagatcgcaaagagactgctccaagggcaacaggatccaagc
ccacaggctggaatggttctgaaccaaagaccaaatgagagaatggtcagcagttcttca
tgctgctcttga

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