Panicum virgatum (switchgrass): 120650178
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Entry
120650178 CDS
T07260
Name
(RefSeq) E3 ubiquitin ligase PQT3-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120650178
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120650178
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120650178
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120650178
NCBI-ProteinID:
XP_039783135
LinkDB
All DBs
Position
9K:13388628..13393693
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AA seq
673 aa
AA seq
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MGVVYYQYKSEKDIYSMQVPHAFISVSELKQLIKTSDKHGRGRTRGRPTEDIIISNAQTG
EEYTDERALVLQNTTVLVRRICIPGQLSEKIVLSPMREVTEGCSAPSSKSVVTDSNSKSY
SSVGVQDEDAAIAAVIDAAEVKLEQHPSKRGHGSGGRKYGHGPLEGETPPPGYVCRSCGV
PGHFIQHCPRESKTPPPGYICYRCQIPGHFIHHCTTIGDPKFDHNKMNRCLAPVVTVSPV
NGILEELVPAAPVSAVGDLPAELHCRLCKKVMIDAVLTSKCCFDSFCDKCIRDYIIMESK
CFCGIKALADDLIPNHTLRSTISNMLGTRASSGGSGTTKHRSSSGSNLDSRLQSHIPSAT
SERKMKQSTNLQLSAAFAPDDGLEVATKGDLVNQPLDKSASNVDTLSKYEGSSAEVSVEK
AVASSEVLKVKDGSGSTSKVTTVSGALEHNATRTNQQKKKRKKADSAKNVQPNNVDYGYN
VPFDPAYYNPFVSGYPWVPEPYMYSSMGMPYGGYPMDPYGVNCFNGMPPQALAMQGYPAS
YQRPGTQPMHYQGSEAVATRPRHDERPKDSSFKPQSSECNRQLGSSHGLESRNRARSGSE
RQHHVRSDRVSDDHDESHSSRKRMRHPSPVYGDKQSRQASRHGSRSREDSSDDECNFKRS
WGRRSSVGVEIRH
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttgtgtattaccaatataagagtgaaaaggatatctattctatgcaagtgccc
catgcttttatctctgtctctgagcttaagcagcttatcaagacgagtgataagcacggt
cgtgggcgaacccgcggccgtcccactgaggatattatcatctccaacgcccagactggc
gaagaatatacagatgaaagagcattggtactacaaaacacaactgtgctggtgcgcaga
atttgcattcctggacagctatcagagaaaattgtcttgtcccctatgagggaagtcaca
gaaggatgttctgcaccttcaagcaagtcagtggttactgattcaaactcaaaatcatat
tcctctgtaggagtgcaagatgaagatgctgcaattgcagcagtgatagatgcagctgaa
gtgaaattggagcagcacccgtctaaaagagggcacggcagtggaggacgcaaatatggt
catggaccattggaaggggagacacctccaccaggctatgtctgccgctcttgtggcgtt
ccaggccatttcattcaacactgcccacgggaaagcaagacgcctccacctggatacatc
tgctacagatgccaaatcccagggcattttattcaccattgcacgaccattggtgatccc
aaatttgaccataataaaatgaatcggtgtcttgccccagtagtaacagtaagtcctgtc
aatggcattctggaagaacttgtcccagctgcaccagtgagtgctgttggtgacttgcca
gcagagctccactgccgactgtgtaaaaaagtgatgatagatgcagtgttgacaagcaag
tgctgttttgacagtttttgtgataaatgcattcgggattacattattatggaatcaaag
tgcttttgtggaatcaaggcactagcagatgacctgattcccaatcacacacttcggagc
acaatcagcaatatgttgggaacacgggctagtagcggtggaagtggtacaactaagcac
agaagttcgtcaggaagcaaccttgattccagattacagagccatatcccttctgctacc
tcagaaaggaagatgaagcaatcaacaaacctccagctatcagcagcatttgcacctgat
gatggactcgaggttgccacaaaaggtgatctagtgaatcagcctctagataaatcagca
tctaatgttgataccctgagcaaatatgaaggcagttctgcagaagtgtcagtagaaaag
gctgtagcaagttctgaagtcctcaaagtaaaagatggaagtgggtcgacatcaaaggtc
actactgtttcaggggccctagaacacaatgccactaggacaaatcaacaaaagaagaag
cggaagaaggcagattcagctaaaaacgttcaacctaacaatgttgactacggttacaat
gttccatttgaccctgcatattataacccttttgtcagtgggtatccttgggtacctgaa
ccttacatgtacagctctatggggatgccttatggtggttatccaatggacccatatggt
gttaattgcttcaatggcatgccaccgcaggctcttgccatgcaaggctatccagcaagt
tatcaaaggcctggaactcagcccatgcattaccagggcagtgaagctgttgcaacacgt
ccaaggcatgatgagagacctaaggacagtagttttaagccccaatcatcagagtgcaac
cgccaactgggatcttctcatggattagaatcaaggaacagagcaaggtcaggctccgag
agacagcaccatgtgcgttctgacagggtctccgatgaccacgatgagagccactcgagt
aggaagagaatgcgccatccttctccagtgtatggcgacaagcagagccgccaggcatcg
aggcacggttccaggagtcgtgaggattcaagcgacgatgaatgcaacttcaagaggagt
tggggccgcagatcatcagtcggtgtggagataaggcactga
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