Panicum virgatum (switchgrass): 120650213
Help
Entry
120650213 CDS
T07260
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120650213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120650213
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120650213
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120650213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
DUF6514
Motif
Other DBs
NCBI-GeneID:
120650213
NCBI-ProteinID:
XP_039783179
LinkDB
All DBs
Position
9K:13722305..13731664
Genome browser
AA seq
863 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLESQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGVASVSTSAVLSTKSSVATSSTQPTVSTTSSQSTSQDQTEETVSQE
SNPESTPQTPPSKGGNLGPSVPVVPIAVSTGSVAFSVPAETINSPVRPTVPTTAAAILSS
ATPRNAPESMPAVTSIPANLSSTLKDDDSMSFPPRRPSPAITEIGIGRGIARGITSQTLG
TAPINIGPVPGNGLVSALPAINDLSKRNLLNTDERINSGGLSQQLVSPLGNKVQPQQVPR
TNDAISSDSASTNENPIIGGRVFSPPVVSGAQWRPQTAGAFQNQSETSQFRGRPEISADQ
REKYLQRYHQVQQQQGNLLNVSNIAGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGLG
AQVSDAGHVKSEEQQSLAEDVGVESAATTGANKQTSEDDTKIPYPNPSAPAAENSQLPRE
TDLSPGQPLQPGMSSSAVGVIGRRSMPDLGAIGDNLTGTSASSGHDQLYNLQMLEAAFHK
LPQPKDSERAKTYVPRHPAVTPASYPQIQAPIVSNPTFWERIGSDTLATDMLFFAFYYQQ
NTYQQYLAAKELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTDDGSGWC
QRIKNDFTFEYNYLEDELSVQTN
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcggaagctgcagggcgagatcgaccgtgtcctcaagaaggtccaggag
ggtgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagttgcagcggtaccgggac
cagatcaagacgtggatccaatccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgctcggaagcagattgaacgagagatggaacggtttaaagtt
tgtgagaaagaaacaaaaaccaaggccttctcaaaagaagggttaggtcagcaaccaaaa
actgatcccaaagagaaggccaaagctgaaacgagggactggcttaataatgtggttagt
gatttggaaagccagattgataactttgaagcagaggttgaagggctttcaattaaaaaa
ggaaaacaaagaccacctcgacttgtacatttagagaagtctattacgcgacataaagct
catataaagaaattggagtcaatcttgagacttttggataacgatgagttgagtcctgag
caagtcaatgatgttaaagattttcttgaagactatgttgaacgtaatcaggaagacttt
gatgaattcagtgatgttgaggatctctatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttccagtcttgtgaagggtgttgcttctgtttcg
actagtgcagttttgagcacgaagagttcagttgcaacttcatctactcagcctactgta
tcaacaacttcttcacaaagtacatcacaagatcaaacagaggagacggtttcacaagaa
agcaatcctgaatcaacaccacaaacaccaccttcgaaaggtggaaatcttggaccttca
gtgccagttgtgcccattgctgtcagtactggtagtgtggctttttctgtccctgcggaa
acaattaattcccctgtgcggccgactgttcctaccacagcggctgcaatactttcttca
gctactccacgaaatgctccagagagtatgcctgctgtaacctcaattcctgcgaactta
tctagcaccttgaaggatgatgacagcatgagttttcctccacgaagaccatctcctgcc
attactgaaattggaattggtaggggcatagctcgtggaataactagtcagacgttaggt
acagctcccataaatattggtccagttccaggaaatggattggttagtgcacttcctgca
ataaatgacttgtccaaaagaaatctattgaacactgacgagaggattaacagtggtggt
ctttctcaacagttggtttcgcctcttggtaataaagttcaaccacagcaagttcctagg
actaatgatgcaattagctctgactctgctagtacaaatgaaaaccctattattggagga
agagtattttctcctccagttgtttctggtgctcaatggaggcctcaaactgctggtgca
tttcaaaatcaaagtgaaactagtcaatttcgtggaaggcccgagatttctgccgaccaa
agggagaaatacctacaaagatatcaccaagtacagcagcagcaaggcaaccttcttaat
gtttctaatatagctggcataaatcagaagcaatttcctacacagcagccaaatcctctt
ctgcaacagtttaactcacagagttcctctatatcctcccaagtgaaccttgggcttgga
gctcaagtatcagatgctggccatgtaaaaagtgaagaacaacaaagtttggctgaagat
gttggtgttgaatctgctgcaacaactggagcaaataaacaaacaagtgaagatgacaca
aagattccttatccgaatccttcagcacctgcagctgaaaacagtcagctgcctagggaa
actgatctatcacctgggcagcctttgcaacctggaatgtcatcatcagctgttggtgtt
attgggcgaagaagtatgcctgatcttggtgcaatcggggataacctcactggaacctct
gcaagttctggtcacgatcaactttataatttgcaaatgcttgaagctgcattccataag
cttccacaacccaaggactcagagcgtgctaaaacttatgttccgcggcatcctgcagtc
acccctgctagttaccctcaaattcaggcaccgattgtatcaaatcctaccttttgggaa
agaattggtagcgacacattggctacggatatgctgttctttgcattctactatcaacag
aacacataccaacaatacttggctgctaaagaattgaagaagcaatcatggagatttcat
aggaggtataacacttggttccagcggcatgtggagccacaagttacgactgatgagtat
gagcgaggctcctatgtgtactttgattttcatgtcaccgatgatggctcaggatggtgc
caaagaatcaagaatgacttcacatttgagtacaactaccttgaggatgagctgtcggta
cagacaaactag
DBGET
integrated database retrieval system
