Panicum virgatum (switchgrass): 120650242
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Entry
120650242 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120650242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120650242
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120650242
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120650242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
120650242
NCBI-ProteinID:
XP_039783216
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All DBs
Position
9K:complement(14039171..14042294)
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AA seq
292 aa
AA seq
DB search
MEPKGETKVDGVRMAMGALDCPVCYEPLKPPILQCGVGHLICNSCCARLKKCPLCPRTAF
ERCYGMERVVESIEVPCCFANNGCTKKITYFNKKMHEKACRHGPCFCPEPGCGFIGPAVA
LANHVANHHKWPSMKFKYFEQFNLTLQPGPLVLHAPDGNVFLMNMTPVEPLGHTISLVCI
QPEATDSRFGCSMVFSCFTGHHQISTLDAVRSSSLSDGMPKDFFCIVPKSRGIDIFLRTT
IDNELVYEDEDELEDEDDDDESYDEDEDEEEDFLRCLIRSIGSRQCSSSLDL
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggagccgaaaggggaaactaaggtggacggagtgagaatggcaatgggtgccttggac
tgccccgtctgctatgagccccttaagcctccgattttgcagtgtggtgtggggcatttg
atctgcaactcatgctgcgccaggctcaagaagtgccccctatgcccaagaactgctttt
gagcgctgctacggcatggagcgtgttgtcgaatccattgaggttccttgttgctttgcc
aacaacggatgcaccaagaagatcacttacttcaacaagaaaatgcacgagaaggcgtgc
cggcatgggccgtgcttctgcccggaacctggatgcgggttcattgggccagcggtggcg
ctggcgaaccatgttgccaaccaccacaagtggccgtccatgaaattcaagtactttgag
cagttcaacctcactcttcagccaggcccgctcgtgctccatgccccggacggcaacgtt
ttcctcatgaacatgacgcccgtggagcccctggggcacaccatctccctcgtctgcatc
cagccggaggccacggactcgaggtttgggtgctccatggtcttctcgtgcttcacgggc
caccaccagatctcaacactggatgccgtgagaagctcgtccttgtctgatgggatgcca
aaggacttcttctgcatcgtgcccaagtctagaggcattgatatatttctccgaaccacc
atagataacgagttggtgtatgaagacgaggacgagctggaggatgaggatgatgatgac
gagagctacgacgaggacgaagatgaggaagaagatttcctacgatgcttaattcgatcc
atcggatctaggcagtgctcttctagtctagatttataa
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