Panicum virgatum (switchgrass): 120650245
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Entry
120650245 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120650245
09124 Replication and repair
03420 Nucleotide excision repair
120650245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120650245
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120650245
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120650245
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120650245
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120650245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
120650245
NCBI-ProteinID:
XP_039783219
LinkDB
All DBs
Position
9K:complement(14103965..14112318)
Genome browser
AA seq
1228 aa
AA seq
DB search
MEDDEYEEGMEMGYGGHHQHRGGHAGYAEDEDEVGYGGGDGDEMDEDGDGDAEQRDEEEI
TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEF
AETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDC
EEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVLI
AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYI
RATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQV
ALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCA
LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIK
AKTVTSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK
PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEIS
PAVIPQAAKIFVNGCWVGIHRNADLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDY
GRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISMT
INDLINARQNPDEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
IYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV
IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLA
PPGTRISGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGL
RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRM
TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKL
TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH
GAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL
LFQELMAMAIAPRMLTHDIKTGKDQKKR
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatgggctacggcgggcaccaccagcac
cgcggcggccacgcggggtacgcggaggatgaggacgaggtagggtacggcggcggggac
ggggacgagatggacgaggatggggacggggacgccgagcagcgggacgaggaggagatc
acccaggaggacgcctgggccgtcatctccgcctacttcgaggagaagggcctcgtgcgc
cagcagctcgactccttcgacgagttcatccagaacaccatgcaggagattgtcgacgag
tccgccgacatcgagatccgccccgagtcgcagcacaaccccggccgccaggctgagttc
gccgagactcttcacaagatcagctttggtcaaatctacctcagcaagccaatgatgaca
gaggctgatggagagacagctactttgtttccaaaatcggcaaggctcaggaacctgact
tactctgcgccactgtatgttgatgtgtcatacagagtaatgaagaaaggacatgactgt
gaggaagttacagagactgcagattatccaaaagtgttcatcgggaaggttccaatcatg
ttgcgttctagttactgcacactatatcaacaatctgagaaggatctgactgaacttggg
gagtgtccttatgaccaaggcggttatttcattatcaatggaagcgaaaaggttcttatt
gcccaagagaagatgagcaccaaccatgtctatgtttttaagaagaggcagcctaataaa
tatgcatatgtggctgaagtccgttctatggctgagaaccagaacaggccagccagcagc
atgtttgtacggatgctttcacgagcaggagcaaaagggggttcatccggtcaatatatc
cgtgctactctgccctatattcgtgcggacattcccattatcattgtttttcgagcatta
gggtttgttgctgacaaagatatactggagcacatatgttatgacttctcagatacacaa
atgatggagttgctacgcccatccctggaggaagcttttgtcattcaaaatcaacaggtt
gctctggactatattggaaagcgtggcgctacagttggtgttactagagagaaaagaatt
aagtatgcaaaagaaatacttcaaaaggaaatgttgcctcatgttggtgttggggaattc
tgtgaaactaagaaggcatactattttggatacattattcaccgactactgatgtgtgct
cttggtcgaagagctgaggatgaccgagatcattatggcaacaaaaggctagatcttgct
ggtccattgcttggagggctgtttagaatgcttttcaggaagttaacaagggatgtcaga
tcttatgtgcaaaagtgtgtggataatggaaaggaagttaatttgcaatttgctataaaa
gcaaaaactgttaccagtggcttgaagtattcccttgctactggaaactggggacaggct
aaccaagctggaaccagagcgggggtttctcaggtgcttaatcgcctgacctatgcttct
acactatcacatctccggaggctgaactctcccattgggcgtgaaggtaaattggcaaaa
ccccgccagttgcataattctcattggggaatgatgtgtcctgctgaaacaccagaagga
caagcttgtggcttggtgaaaaatcttgccctgatggtatatatcactgttggttctgct
gcaaatccaattttggaatttttggaggaatggggcacagaaaattttgaggagatatca
ccggccgtcattccacaagctgctaagatttttgttaatggttgttgggttggaattcat
aggaatgctgacttgttggtgaagacccttcggcgtctaagaagacagattgatgtcaac
actgaagttggtgtggttcgtgatattcgtcttaaagaacttagactctacacggattat
ggtcgatgcagtcgtccgttgtttattgttgagaaccagagattgctcatcaagaaggcg
catatccgagcattacaacaaagggagactcctgatgaaggttggcacgaattagtctca
aaaggatatatagagtacatagatactgaagaagaggagactaccatgatttccatgacc
ataaatgaccttataaatgcgagacagaacccagatgaggcgtattctgagacatacacg
cattgtgagattcatccttcattgatacttggtgtttgtgcgtcaattattccttttcct
gatcacaaccagtcacctcgtaatacatatcaatctgctatgggaaagcaagccatggga
atttatgtcaccaactaccagttaagaatggacacattggcctatgttctatactaccca
caaaagcctttagttactacacgtgctatggaacatttgcacttcagacaattaccagcg
ggcattaatgcaattgttgcgattgcttgctactctggttataaccaagaagattcagtt
attatgaatcaatcttccatagatcgtgggttcttccgatcactgtttttccgctcttac
agagatgaggagaagaagatggggacacttgtcaaagaggaatttggtcgcccaaatagg
gaaaatactatgggaatgcgccatgggtcatacgataaactagatgatgatggccttgca
ccaccaggaacaaggatctctggtgaagatgtcattattgggaagacatctcctattcca
caagatgacgctcaagggcaagcttctaggtactcgaagcgcgatcatagtacttctctg
cgtcacagtgaaagtggcatggtagatcaggttctgttaacaacaaatgctgatggtctt
agatttgtcaaggttagaatgcgatcagttcgcataccacaaattggagacaagtttagc
agtaggcatggacaaaaaggaactgttgggatgacttatacgcaagaggacatgccatgg
acaattgaaggcatcacacctgatattattgtgaatccacatgctattccatcccgtatg
actattggacagctgattgagtgtattatgggtaaagttgcagctcacatggggaaggaa
ggagatgcaactccgtttactgatgttactgtggataacatcagcaaggctcttcataaa
tgtggttatcaaatgcgtggatttgaaaccatgtacaatggtcacactggaaggaaattg
acagctatgatttttctgggtcccacatattaccaaagactcaagcacatggtggacgac
aagatacattcaagaggtcgtggtcctgttcagatactcacccggcaaccagcagagggg
cgttcacgtgatggtggtctccgctttggagaaatggaaagggattgcatgattgcgcat
ggagcagctttctttctgaaggaaagactgttcgaccagagtgatgcatacagagtccat
gtgtgtgagaaatgtggtctcattgcaatcgccaacctaaagaaaaactcattcgagtgc
aggggatgcaagaacaaaactgacattgtccaagtacacataccctatgcttgtaagctt
ctgttccaggagctcatggcgatggccattgctcctagaatgctcacccatgatatcaag
acagggaaggatcagaagaaacggtga
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integrated database retrieval system
