Panicum virgatum (switchgrass): 120650267
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Entry
120650267 CDS
T07260
Name
(RefSeq) U3 snoRNP-associated protein-like YAOH
KO
K14793
ribosomal RNA-processing protein 9
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120650267
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
Other 90S particles
120650267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
NBCH_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
120650267
NCBI-ProteinID:
XP_039783243
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Position
9K:14363647..14369928
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AA seq
507 aa
AA seq
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MAPRPRKRASRPTKPRAGSRRGGGGGDDNPFFDSEPKRRRGSRDEDIESEDSDDDAVGFG
GAVDEDGDVGVKEEEDEETAGEKKVRLAKELLKKLSDAAKRKEDDEDEDEDEDEAGGSRV
AEILQRRQLEESGRKRRELAERVLPPEPKDGFKFIVKHRQPVTAVALSNDGDQGFSASKD
GVIAHWDVETGKSEKYLWPSENVLISHHAKPPLSAKRSKHILALAVSSDGRYLASGGMDR
HIHLWDVRSREHIQAFSGHRGPISCLAFGPDSSELFSGSFDRSIMQWNAEDRTYMNCLYG
HQNEILTMDAFNKDRLLTVARDRTMHLWKIPEESQLVFRAPAAASLECCSFIDDKEFLSG
SDDGSIELWSIMRKKPTFIVRNAHPSLDSDDQELPKENGIHKPEKVSMAQSWVGAVAARK
GSDLAASGAGNGLVRLWAIEPDSKGIRPLFKFKLDGFVNSLDIAKSGRFIVAGVGQEPRL
GRWGRVRSAQNGVAIHPIRLKEEKDEL
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcgaccccgcaagcgggcctcgcgccccaccaagccccgcgcgggttcccgc
cgtggcggcggcggaggggacgacaaccccttcttcgattccgagcccaagcgccgccgc
gggagccgcgacgaggacatcgagagcgaggacagcgacgacgatgcggtgggtttcggc
ggcgccgttgatgaggatggagacgtgggggttaaggaggaggaggatgaggagactgcg
ggggagaagaaggtgcggctggcgaaggagttgctgaagaagctgtcggacgccgcgaag
aggaaggaggatgacgaggacgaggatgaggacgaggacgaagccgggggcagccgggtg
gcggagatccttcagaggaggcagctcgaggagagcgggaggaagcggagggagctcgcc
gaaagggttttaccaccagaacccaaggatggctttaagtttattgtgaagcatcgacaa
cctgtaactgctgttgctttatccaatgatggtgatcaggggttttcagcatcaaaagat
ggagtcattgcccattgggatgttgaaactggcaaaagtgagaagtatttatggccaagt
gaaaatgtattgatttctcatcatgctaaaccacctctatcagctaaacgaagtaagcat
atactagctttagctgtcagttctgatggtcgctacttggcgagtggtggtatggaccgt
catatccatttatgggatgttcgttcccgggagcacatacaggcttttagcggtcaccgc
gggccaatatcatgccttgcatttgggccggattcatcagagttattctctggttctttt
gaccgttcaataatgcagtggaatgctgaagacagaacatacatgaactgtctatatggc
catcagaatgaaatcttgactatggatgcgtttaataaagataggcttctgactgtagca
cgggaccggacaatgcatctttggaagattccggaagaatcgcagttagtgttccgtgct
cctgctgctgcatctttagagtgctgcagctttattgatgacaaggaatttttatctgga
tctgatgatggaagcatcgagctttggagcataatgaggaaaaaacctacgttcatagtt
agaaatgctcacccttccctcgacagtgatgatcaagagttacctaaagaaaatggaatt
cataaacctgaaaaagtctcaatggcccagtcatgggttggcgctgttgccgcaagaaaa
ggttctgatcttgctgcatcaggagcaggaaatggtttagttcgtctctgggctattgaa
cctgattctaagggaattcgacccttgttcaaatttaaattggatggatttgtcaattct
ctggacattgccaaatctggacgctttattgttgctggtgttggccaggagcctcgcctt
ggaagatggggccgcgttcggtcggcgcagaatggggttgccatccatccgatccgacta
aaggaggagaaagacgagttgtag
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