Panicum virgatum (switchgrass): 120650272
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Entry
120650272 CDS
T07260
Name
(RefSeq) histone-binding protein MSI1 homolog
KO
K10752
histone-binding protein RBBP4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120650272
03083 Polycomb repressive complex
120650272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120650272
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
120650272
Histone modification proteins
HAT complexes
HATB complex
120650272
HDAC complexes
Sin3A-HDAC complex
120650272
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
120650272
PRC2.2
120650272
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
120650272
Heterochromatin formation proteins
Other heterochromatin formation proteins
120650272
Chromatin remodeling factors
NuRD complex
120650272
NuRF complex
120650272
NuRF complex (fruit fly)
120650272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
CAF1C_H4-bd
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
eIF2A
WD_LRWD1
Beta-prop_HPS5
Beta-prop_RIG_1st
MIOS_WD40
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
120650272
NCBI-ProteinID:
XP_039783254
LinkDB
All DBs
Position
9K:14454018..14460580
Genome browser
AA seq
431 aa
AA seq
DB search
MPKAGGGAADEEEFRAEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRT
EPPGKDHSVQKMILGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHADIGGFGAASG
KVQIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRL
KGHNSEGYGLSWSIFKEGHLLSGSDDAQICLWDIKANSKNKSLDALQIFKHHDGVVEDVA
WHLRHEYLFGSVGDDHHLLIWDLRSPAPTKPVQSVVAHQGEVNCLAFNPFNEWVVATGST
DKTVKLFDLRKIDKSLHTFDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQ
TPEDAEDGPPELMFIHGGHTSKISDFSWNPCEDWVLASVAEDNILQIWQMAENIYHDEDD
LPISDEPPKTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggccggcggcggcgcggcggacgaggaggagttccgcgccgaggtcgaggag
cgcctcatcaacgaggagtacaagatctggaagaagaacacacccttcctctacgacctc
gtcatcacgcacgcgctcgaatggccctccctcaccgtccagtggctccccgaccgcacc
gagccgccggggaaggaccactccgtccagaagatgatcctggggacgcacacctccgac
aacgagcccaactacctcatgctcgcgcaggtccagctgcccctcgacgacgctgaggcc
gacgcgcgccactacgacgacgaccacgccgacatcggagggttcggcgccgcatccggc
aaggtgcaaattgttcagcagataaatcatgatggagaggtcaatcgagctcggtacatg
ccccaaaattcatttataattgctaccaagacagttagtgcagaagtatatgtgttcgac
tatagcaagcacccatcaaagcctccactagatggtgcatgcaaccctgatttacggctg
aagggacataactctgaaggatatggcttatcctggagtatttttaaagagggacatttg
ttgagtggctctgatgatgctcaaatttgcttatgggacattaaagcaaatagtaaaaac
aaaagtcttgacgccttgcagatttttaagcatcatgatggcgttgttgaagatgttgct
tggcatttgaggcatgaatacttatttgggtcagttggtgatgatcatcatcttctgatt
tgggacctgcggtctcccgcccctactaagcctgttcagtcagtggtggcacaccagggc
gaggtgaactgcctggctttcaacccgttcaatgaatgggttgttgcaactggttctact
gacaagactgtcaaattatttgatcttaggaagattgataagtctctgcatacctttgac
tgtcacaaagaggaagtatttcaagttggatggagtccaaagaatgagactatacttgca
tcatgttgcttgggcagaagactcatggtctgggacctaagcaggattgatcaagaacaa
acaccagaggatgcagaagacggccctcctgagctcatgttcattcatggaggccatacc
agcaagatctctgatttctcctggaacccctgcgaggattgggtgcttgctagcgtcgct
gaagacaatatcctccagatatggcagatggctgagaacatctaccatgatgaagatgac
ctgccgataagcgatgagccaccaaagacatcttga
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