Panicum virgatum (switchgrass): 120650451
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Entry
120650451 CDS
T07260
Name
(RefSeq) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120650451
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120650451
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120650451
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
120650451
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (A)
120650451
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120650451
Prokaryotic type
Other AARSs
120650451
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
CAF1A_acidic
PGBA_C
Motif
Other DBs
NCBI-GeneID:
120650451
NCBI-ProteinID:
XP_039783531
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Position
9K:16881273..16887839
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AA seq
616 aa
AA seq
DB search
MADGAGSASGLEEKLAGLSTGGGGDDKQNAQPAGEGGEEPQLSKNAKKREEKRKKLEEER
RLKEEEKKDKAAAAAAASGKTQKASAADDDDMDPTQYYENRIKTLDSLKAIGVNPYPHKF
PVGISVAEYIEKYKSLSDGEKLDVTECLAGRIMNKRTSSSKLFFYDLYGGGLKVQVMADA
RTSELDEAEFTKYHSGVKRGDIVGICGYPGKSKRGELSVFPKKFVVLSPCLHMMPRQKGE
GSAAPAPWTPGMGRNIENYVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFLD
DREFLEVETPMMNMIAGGAAARPFVTHHNELNMRLFMRIAPELYLKELVVGGLDRVYEIG
KQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMELTETMLSGMVKELTGGYKIKYHANGVT
NPPIEIDFTPPFRRIDMIKDLEEMANLNIPKDLSSDEANRYLIEACVKYDVKCPPPQTTS
RLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTE
LNDPVVQRQRFEEQLKDRQSGDDEAMALDETFCIALEYGLPPTGGWGLGIDRLTMLLTDS
QNIKEVLLFPAMKPQE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgcgggctcggcttcgggcctggaggagaagctcgcggggctctctacg
ggcggcgggggcgacgacaagcagaacgctcagccggccggtgagggcggagaggagcct
cagctctcgaagaacgcgaagaagagagaggagaagaggaagaagctggaggaggagcgg
aggctcaaggaggaagagaagaaggacaaggcggcggcggctgctgctgccagtggaaag
actcagaaggcatctgctgccgacgatgatgacatggatcccactcaatactacgagaat
aggatcaagacacttgattcgctcaaggccattggtgtaaacccctatccgcataagttc
ccagttggcatctctgtagccgaatacattgagaagtacaagagcttgagcgatggggag
aagctagatgtgacagagtgtttagctgggaggatcatgaacaagagaacatcctcatct
aagctattcttttatgatctttatggcggtggcctgaaggttcaagtgatggctgatgcc
aggacctcagagttggatgaagctgaattcactaaataccactcgggtgtgaagcgaggt
gatattgttggcatatgtggctatccaggaaaaagcaagcgaggtgagcttagtgtattc
ccaaagaaatttgttgtgctctctccttgtcttcatatgatgcctcgacagaagggtgaa
ggaagtgcagcacctgcaccatggactccaggaatgggcaggaacattgaaaattatgtt
ttgagggatcaggaaactaggtatcgtcaacggtatcttgatctaatggtaaatcatgaa
gtgaggcatatcttcaagacacgatctaaagttgtctcttttatccggaagtttcttgat
gaccgtgaatttttggaggtggagactccaatgatgaacatgattgctggtggagcagct
gcaaggccttttgtcacacaccacaatgaattaaacatgaggctttttatgcgcattgct
cccgagttatatctgaaggaattggttgtaggtggattggaccgtgtttatgaaattgga
aaacaattcaggaatgaagggattgatttaacacacaatcctgaattcacaacttgtgaa
ttttatatggcttatgcagattacaatgatttgatggagcttaccgagaccatgttgtca
ggcatggttaaggagcttacaggtgggtacaagataaaatatcatgcaaatggtgttaca
aatcccccaatagaaattgatttcacgcctcccttcagaaggatagatatgattaaagat
ttggaggaaatggccaatctcaatataccaaaagatctgtcaagtgatgaagcgaatcgt
tacttgatagaagcatgtgtgaagtatgatgtcaaatgtccccctccccaaacaacatcg
cggttgcttgacaagttagttggccacttcttggaggagacctgcgtgaatccaacattt
atcatcaatcatccagagataatgagtccattagcaaaatggcataggtcccgacctgga
ctgactgagaggttcgagctatttgttaacaaacatgaggtgtgcaatgcgtacacagag
ttgaatgatcctgttgtccagaggcaacggtttgaggaacaactaaaggatcgtcaatct
ggtgatgatgaagctatggccttagatgaaactttctgtattgcccttgagtatggtttg
ccaccaacaggtggttggggtttgggaatcgatcgccttacaatgttgctaacagattcc
cagaatattaaggaagttcttctattcccggctatgaagcctcaagagtag
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