Panicum virgatum (switchgrass): 120650460
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Entry
120650460 CDS
T07260
Name
(RefSeq) endoribonuclease Dicer homolog 2a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120650460
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120650460
microRNA pathway
RISC loading complex
120650460
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
Dicer_dsRBD
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
120650460
NCBI-ProteinID:
XP_039783542
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Position
9K:16945195..16957549
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AA seq
766 aa
AA seq
DB search
MGGSAGAGAGMADARGGGAPPEADEGAGGNDTAEDTYQHGQPVYFPEELVDNWVSFSRRG
LYYCYNISLRGCLNTTATPADIILAVKCDMGPEFLYNLFNSGGVDVTIRYMSIVHLNQEQ
VIFARRFQTTIISLLIGNGHSEVRDAIKYFHELQVSEGVVYLLLPSVSGKIDWCGIKFST
SSVYDATEKDMGHCHSCKDPDLLQTMDGPCCRCMLQNSVVYIPRDRKFYNITGFLDLNEN
NPLHLRDESVVSSARRGLCLTSQSNPLLVASGLFTVQNFLYKCYGKGKETSGRIAVKLPP
ELCRVVMAPVSTNILCSFSFVPSIMYRIQCLLLSAKLKIQLGPRMQQFNITALKILEALT
TKECQEEFSLESLETLGDSFLKYVTGQHLFSKYKHREGKLTSMRKELVSNTTLCHLACNR
NLVGYIRGEEFNLKKWIIPGLGYDICGNTKCLFLLTNNMYTLKEISIKSKRIADTVEALI
GAYLSASGEQAAFHFMKSLGLDLELHNEMQGERKIITKSEEIIDVRSLETMLGYAFNDCS
LLIEALTHGSYNNAGPCYERLEFLGDAVLDHIITDYFYKQYYPGCTPALLTNLRKASVNN
CCYAHAAVKAGLHKHILHSSSKQMISDLENSGRSFSGPSHGWEPGIGLPEDLADLIESIA
GAIYLDSKHKKEVVWRAMRRLLEPLATPKTVELSPVSELKEICEHRKYPKPLYLTRDNGV
GVTRVVAKVKAAGTVYCGTGKGRNKKVAEILAAKALLQKLKAASVA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgggaggctccgccggcgccggcgccggcatggccgatgcgcggggaggaggagctccg
ccggaagccgacgaaggggccggcggcaacgacacagccgaggatacatatcagcatgga
cagcctgtctactttccagaagaactggtggacaattgggtgtcgttttctcgccgcggc
ttgtattattgctacaacatctccttgcgagggtgtttgaacacaaccgctactccagca
gacataatattagctgtcaaatgtgacatgggtcctgaattcctctataacttatttaac
tcgggtggtgtcgatgtcaccattcggtacatgagtatcgttcatctgaatcaagaacag
gtcatttttgccagaagatttcagaccaccattatttctttgctcattggcaatggccac
tcggaggtcagagatgctataaaatacttccatgaactacaagtatctgaaggcgttgtc
tatcttcttctgccttcagtttctggcaagattgattggtgtggtatcaagttctcaacc
tcatcagtatatgatgcgactgaaaaagatatgggacattgtcattcttgtaaagatcct
gatttactgcagacaatggatggtccttgctgcaggtgcatgcttcagaattctgttgtc
tacatccctcgtgatagaaaattttataatattacagggttccttgacttaaatgaaaac
aacccgctgcatttgagagacgagagtgttgttagctccgcgagacgtggcctatgttta
acctctcaaagcaacccactattggttgccagtggactattcacagtgcaaaatttcctc
tacaagtgctacggaaaagggaaagaaactagtggcagaattgctgttaagttgccacct
gaactctgcagagtagtcatggcgccagtttcaacaaatattttatgcagcttctcattt
gttccttccataatgtatcgtatccagtgtctgcttctttctgcaaagttgaaaatccag
ttgggcccaagaatgcaacagttcaacataacagctctgaagattctggaagcgcttaca
acaaaggaatgccaggaggaattttcactggaatcattagaaacacttggggattctttc
cttaagtatgttacaggccagcatctttttagcaaatacaagcatcgagagggcaagcta
acctccatgagaaaagaattggtctccaacacaactctatgtcatctagcttgcaacagg
aatcttgtggggtacattcgaggtgaagagtttaatctgaaaaaatggatcattccagga
cttggttatgacatatgtggtaacaccaaatgtttgttcttattaacaaataatatgtac
acactgaaggaaatatccataaaaagcaagagaattgcagatacagtcgaagccttgatt
ggggcctatctcagtgcttctggtgaacaggcagcatttcatttcatgaaatcattagga
ttggatttagaactgcataatgaaatgcaaggtgaaaggaaaattataacaaaatctgaa
gaaatcattgacgtgagaagcttagagacgatgctcggttatgctttcaatgattgttca
ctgttaatagaagcactgacacatggttcctacaataatgctggcccttgctatgagagg
cttgagtttcttggagatgcggtattggaccacatcataactgattacttctacaaacag
tactaccctggatgtacaccagcattgttgacaaatctaagaaaagcttctgtgaacaac
tgttgctatgcacatgcagctgttaaagcaggattacacaagcatattcttcattcttca
tcaaaacagatgattagcgaccttgagaattcggggcggtcattttcaggcccatcgcat
ggttgggaacctggcattggtctacctgaggaccttgcagatttgattgaatcaatagct
ggtgcgatttacctcgacagcaagcataagaaggaggttgtctggagagccatgagacgc
ctactggaacctcttgccaccccaaagactgtggagctgtccccggtgtcagaactgaaa
gaaatatgcgagcacagaaaataccccaagccgctatacttaactcgtgataatggagtt
ggagtaacaagggtggttgcaaaggtgaaggctgcaggtacagtgtactgtggaactgga
aaaggccgcaacaagaaagtggcagaaattttggccgcaaaggctctgctccagaaactg
aaggccgcatctgtagcatga
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