KEGG   Panicum virgatum (switchgrass): 120650495
Entry
120650495         CDS       T07260                                 
Name
(RefSeq) protein RAE1-like
  KO
K14298  mRNA export factor
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120650495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120650495
   03036 Chromosome and associated proteins [BR:pvir03036]
    120650495
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120650495
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120650495
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_HPS5 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_BBS7
Other DBs
NCBI-GeneID: 120650495
NCBI-ProteinID: XP_039783579
LinkDB
Position
9K:17292362..17299358
AA seq 343 aa
MASLTGLTANPNPNKSFEIQPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGNSQP
KVSISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPQTVAMHDAPVKEVAWIPQ
MNLLVSGSWDKTLRYWDTRQANPVHIQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNP
QTEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQSKNFTFKCHREGND
IFSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPISCSTFNSDGSIFAY
AVCYDWSRGAENHNPAAAKTSIYLHSPQDSEVKGKPRIATGRK
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggcgagtctgaccggcctcaccgcgaaccctaacccgaacaagtcattcgagatccag
cccaaccccggcgactccgtctcgagcctcagcttcagccccaagagcaatctgctggtg
gcaacctcctgggataaccaggtgaggtgctgggagattgttggcgggaacagtcagccc
aaggtgtccatatcgcatgatcaaccggtcctctgctcagcttggaaggatgatggaaca
actgtcttctctggaggctgtgacaagcaggtcaaaatgtggcctctgctgtcaggcggg
cagcctcagacggttgcgatgcatgatgcgcctgtcaaggaggtcgcgtggattcctcag
atgaatcttcttgtctctggaagctgggataagactctgaggtactgggacacaaggcaa
gcaaatcctgtgcatatccagcaacttccagagcgttgctatgctctcacagtgaattat
ccccttatgattgtgggaactgctgatcgtaatcttgtagtcttcaacttgcagaatcct
cagacggagttcaagcgtattcaatcaccactaaaataccagacacggtgtcttgctgca
ttccctgatcagcaaggatttctggttggctccatagaaggaagagttggtgttcaccat
atcgatgattcacaacaaagcaagaatttcaccttcaaatgtcacagggaaggaaatgat
atattctctgtcaattcactgaacttccaccctgtccatcacacatttgcaactgctgga
tctgatggtgctttcaacttctgggataaggacagcaagcagaggctgaaggcttttagt
agatgccctcttcccatttcttgcagcacctttaacagtgatggttccatatttgcttac
gcggtctgctatgattggagccgtggggctgaaaaccacaatcctgcagctgcaaagaca
tccatctacctccacagtccacaggattctgaggtcaaaggaaagccgcggattgcaaca
ggcaggaagtga

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