Panicum virgatum (switchgrass): 120650580
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Entry
120650580 CDS
T07260
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120650580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120650580
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120650580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
DZR
Motif
Other DBs
NCBI-GeneID:
120650580
NCBI-ProteinID:
XP_039783687
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Position
9K:complement(19227038..19233326)
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AA seq
615 aa
AA seq
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MPRKVVSGPDYDDDYDDYDEYDDDYDEYDDTRYGNDQHPVQKGKESLKKSSTMVPVHWTC
SMCTFNNHESMTYCEMCGVFRETFIKSAKDGSLKDAVNAASSEPRACAAPKTDSAKTPMK
TRGVHSDGDSARKHANTSCDKANSTQLPSAGSSLGAEKKKKIPVVSDEIPVERTALSVPD
HFQLKDDKSGGASSSSQNDYVTQKLSSDISQLNVDKNNVNVTKPCLPEEYKPEKWMLADQ
ESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISRKDMHKNEKESKEKGKGSFAFAWAM
DESSEERERGVTMTVGVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACN
FKDSAITWIPLSAVENQNLIKPPSDARLTSWYQGFCLLDAIDSLQLPSRDVTKPLILPIC
DVIKSQSTGQLAAFGKLETGAIQNGSKVLVLPCRVEATVKNIERDTNSCSIARAGDNVAV
SLQGIDGNQLIPGGVLCHPGFPVAVANRLELKILVLDIAIPILAGSQVEFHIHHVKEAAK
VTKIIALLDKTGKPSKSAPRFLKSKQNAVVQVTLDGAVCVQEFSKSRALGRAYLRLSGRT
IAVGVVNRVIGQDEN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaagttgtatctgggcctgactatgatgatgattacgatgactatgatgag
tatgatgatgattatgatgagtatgatgacacaagatatggcaacgatcaacatcctgtt
cagaagggaaaagaatcattgaagaagtcctcaactatggtgcccgtgcattggacgtgt
tccatgtgcacattcaataatcatgaaagcatgacgtactgtgagatgtgtggggttttc
cgtgaaacctttatcaaatctgccaaggatggttcattaaaagatgcagtcaacgcagcg
tcaagtgagcctagggcatgtgctgcaccaaaaacagattctgccaagacgccaatgaag
actcgtggtgtacattctgatggtgattctgcgagaaagcatgctaatacgtcatgtgat
aaagccaattccacacagttaccatctgctggtagctcattaggtgctgaaaaaaagaag
aaaattcctgtagtttctgatgaaatacctgtggaaaggacagctctatcggtccctgat
cattttcagctgaaggatgacaagagtggtggggctagcagttcgtcacagaatgattat
gtgacccagaaactctcttctgacataagccagctaaatgtagacaagaacaatgtgaat
gttacaaaaccttgtttgcctgaagagtataagcctgagaagtggatgttagctgatcag
gagtcaggggtgctgagccaactaaaccttgcaatagtgggtcatgttgattctggcaag
tcgacactatctgggagattactgcatctattaggaaggatatcgagaaaagatatgcac
aagaatgagaaggagtcgaaagagaaagggaagggatcatttgcttttgcatgggccatg
gatgagagcagtgaagaaagggaacgaggtgtgacaatgacagtaggtgtggcctatctg
gagacgaagaaataccgtgtggttttgcttgactcacctggccacaaagattttgtgcca
aatatgatatctggtgcaacacaagctgatgcagctattcttgtggttgatgcttgcaac
ttcaaagactcagctattacctggattcctcttagtgctgtagaaaatcaaaatttgatc
aaacctccttcggatgctcgtttgacttcctggtatcaggggttctgtctcttggatgct
attgattccctgcagcttccttctcgggatgttacaaagcccctcattcttccaatctgt
gatgttatcaagtctcagtcaacagggcagttggcagcttttggaaaattggaaaccggg
gctattcaaaatggttctaaggtgttagttttaccttgcagggtagaggcgacagtgaaa
aacattgagcgggacactaattcatgcagcatagcaagagctggtgacaatgtggcggtt
agtttacagggtattgatgggaatcaactaatacctggcggggtgctttgccaccctggt
ttccctgtggctgtagctaaccgcttggagcttaagattctagtcctggatattgccatt
ccaattcttgctggttctcaggtggagtttcacatacatcatgtcaaggaggccgcaaaa
gtaacaaaaatcattgctttgcttgacaagactgggaaaccaagtaaatcagcacctcga
tttcttaaatcaaaacagaacgctgttgttcaggttacactcgatggggcagtctgcgtt
caggaattctccaagagccgagcacttgggagggcatacttaaggttgtctggtcgcaca
atcgctgttggtgtagttaatcgggtaattggccaagatgagaactag
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