Panicum virgatum (switchgrass): 120650582
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Entry
120650582 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120650582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120650582
03036 Chromosome and associated proteins [BR:
pvir03036
]
120650582
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120650582
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120650582
mRNA degradation factors
5'-3' decay
Decapping complex
120650582
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120650582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NA-iREase2
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
120650582
NCBI-ProteinID:
XP_039783690
LinkDB
All DBs
Position
9K:19246167..19251313
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AA seq
509 aa
AA seq
DB search
MHQPRARYPPGYGSGGGGRGGGGGNGGGGGGNHNYYGRNPQPQPHHHQHYQHQQPAPPQQ
QPQQPAHRNASHQHQQWLRRDQGPASAAGSGDAAGRTAAQLDAVDSSSQDWKAQLNIPAP
DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAK
NGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGG
TSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEA
LIHFLPPSRQLLMFSATFPVTVKEFKEKYLPKPYVINLMDELTLKGITQYYAFVEERQKV
HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
GACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYED
RFNLYRIEQELGTEIKTIPPQIDLAVYCQ
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcccagagcacgctacccgcccggctacggctccggcggcggcggacgtggt
ggcggaggcggcaacggaggaggcggcggcggaaatcacaactactacggccgaaacccg
cagccgcagccgcaccaccaccaacactaccagcaccagcagccggcaccgccgcagcag
caaccgcagcagcccgcgcataggaacgcctcgcatcagcatcagcagtggctgcggcga
gaccagggccccgcctccgccgcggggtctggagatgctgcggggaggacggcggcgcag
ctcgacgccgtagactcgagttctcaagattggaaggcgcaattgaatataccagctccg
gatacacgctacaggacagaggatgtcactgcaacaaaaggcaatgagtttgaagattat
tttttgaaacgtgagctgcttatgggaatctatgaaaagggctttgaaaggccatcccct
attcaagaagaaagcattccgattgcactgactggaagtgatattcttgcaagagcaaaa
aatggcactgggaagactgctgcattttgcattccagcacttgaaaaaattgatcctgag
aaaaatgccattcaagttgttatactggtaccaacaagggaactagctctgcagacttca
caagtctgtaaggagctcgggaagtacctgaacattcaagttatggtcagcactggtgga
accagcttgaaggatgacatcatgcgtttgtaccaacctgttcatttacttgttgggact
cctggccgtatactggatcttaccaggaagggcatttgtgttctgaaagattgttcaatg
cttgtcatggatgaggctgacaagctattagctccggagttccagccttctatagaggca
cttattcatttccttcctcctagtcggcaactgttgatgttttcggcaacctttcctgtt
accgtcaaggaattcaaagagaaatacctgcctaaaccttacgttattaatcttatggat
gaactgaccctgaaaggaatcactcaatactatgcttttgtcgaagaaagacagaaagtt
cattgcctgaatacacttttctctaagcttcaaattaatcaatccattatattctgcaac
tctgttaatagagttgagctactggctaagaaaataactgaacttggttattcatgcttc
tacattcatgctaagatgttgcaagaccacagaaaccgagtgtttcatgattttcgcaat
ggtgcttgcagaaaccttgtgtgcacagatctgtttaccagaggaattgacatccaagct
gttaatgtggtcattaattttgacttccccaagacctccgagacatacttgcatagggtt
ggtcgttccggtcgatacggacaccttggtttggcagtgaacttgatcacttatgaggat
cgtttcaacttgtataggattgagcaagaactcggaacagaaattaagacaataccccca
caaattgacctggccgtatattgccaatga
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