Panicum virgatum (switchgrass): 120650647
Help
Entry
120650647 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2-like isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120650647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120650647
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120650647
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120650647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
GRXCR1_C
Motif
Other DBs
NCBI-GeneID:
120650647
NCBI-ProteinID:
XP_039783779
LinkDB
All DBs
Position
9K:19982681..20009105
Genome browser
AA seq
1211 aa
AA seq
DB search
MDKATKSASPAGAKEGDYAALRELFRPHVESFDYFLDAGLEKMLAEIRPAEIKDPNSSTI
LKIFLEKGHVLPPMRDGRLGVPLYPQECRQARITYQGEFKVDVCLQCNENGALVRHTFNF
GHLPIMLMSKLCHLRDADPNKLVFHGEESTEMGGYFICGGMERLIRILILQKRNYPMGMV
RGSFLKRGAGYTDKAVVIRCVHTDQSSVTIKLYYLQNGSARLGFWLGGREFLLPVGIVLK
ALIDTSDREIFTSLTCCYSDKHGREKGVVSTQLIGERAQIILDEVRDLSLLTHMQCLMHI
GKYFRSVMEGFEHYDYEAVAEAVLKDYIFVHLENNHDKFNLLIFMLQKLYAIVDQTASPD
NPDALQFQEALLPGHLITVFLKDRLQDWLRKSKRLIMEEATKNKNFDLNNALEVRKFLTK
HTTSVGRAIESMIKIGRVNSQSGLDLPQTDGMTIHAERLNFHRYISHFRSVHRGAAFAKM
RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGAVKDFEKIKKSLS
AELVRVGMNPVFPKIERSGPPEVLHVHLDGCILGTVPSARIEEVVNFLRKLKLLAHSGIP
EDLEVGYVPLSLCGAYPGLYLFTNPARFVRPVKNLLSVPGGKQSIELIGPFEQAFMEIRC
PDGGDGGRKKMFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQA
LKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLAYTGYDMEDAMILNKS
AVDRGMFRGHIYQTECIDLSKKNRENVPEIFAKSVLSRDTNTAIDSDGLPRLGQVVICSF
YIKSYFLVQEQLLNSFYMYFHGQTVHPNEQYYSVYNRLTGAIRPVKLKGSEPAYIDYVAV
NGASSKGDFQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLI
INPHAFPSRMTIAMLLESMAAKAGSLHGKFIDATPFSSSVKEEGKDSHNPDSIVNELGPM
LASYGFDYHGTEILYSGFFGTEMECVIFIGPVYYQRLRHMVSDKFQVRTTGRIDQVTKQP
IGGRKHGGGIRFGEMERDALLAHGSSYLLHDRLHSCSDYHIADVCSFCGSLLTATVIKSD
TQKKAKREMLGVSTVRPAKNLSCHACKTSKGMETVAMPYVFRYLAAELAAMNIKLELRLS
NKSELPPSQGS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggcgacaaagtcggcgtcgccggcgggagccaaggaaggcgactacgcggcg
ctgcgggagctgttccggccgcacgtggaatcgttcgactacttcctcgacgcggggctg
gaaaagatgctcgcagaaatccgccccgcggagatcaaggatcccaactccagcaccatc
ctaaaaatattcttggagaagggtcatgtgctaccaccaatgagggatggtcggttgggt
gtaccactctacccccaggagtgcaggcaagcaagaattacatatcagggggaatttaaa
gtggacgtctgcctccagtgtaatgaaaatggggcactagtcaggcataccttcaatttt
ggccatctgcctattatgctaatgtcaaaactgtgccatctgagagatgctgacccaaat
aaattagttttccatggtgaagagtctaccgaaatgggcgggtacttcatatgtggcggg
atggagagacttataaggattcttatattacaaaagcgtaactatcctatgggcatggtg
cgtggttcttttcttaaacgtggtgctggatacactgacaaagcagttgtcataagatgc
gtccatacagaccagtccagtgtgacaataaagttgtattacctccaaaatggaagtgca
aggcttgggttttggttggggggtagagagtttctgcttcctgttgggattgtcctcaag
gcccttattgatacgagtgaccgggaaatctttacaagcttgacatgctgctacagtgat
aaacatggaagagaaaagggtgttgtcagtacccaactaattggtgaaagggcacaaata
attcttgacgaagtcagagatctgtcccttttgactcacatgcaatgcttgatgcatatt
ggaaagtacttccgatctgtgatggaaggatttgaacattatgactatgaagctgttgct
gaagcggttctgaaggactatatttttgtgcacctggaaaacaaccatgataaatttaat
ctattgatatttatgctgcagaaactttatgctatcgtagaccaaactgcttcgcctgac
aatcccgacgcactacaattccaagaggctctcttgccggggcacttaatcacagttttt
ctgaaggatagacttcaggattggctaagaaagtctaaacgtttaatcatggaagaggct
acaaagaacaaaaattttgatctcaacaatgcattggaagtaagaaaatttcttactaaa
cacacaacatctgttggtagagctatcgagagtatgataaagatcgggagagtgaattca
caatcaggattggatcttccacagacagatgggatgaccattcatgctgaacggctcaat
tttcatcgttatatttcacacttccgttctgttcataggggtgctgcttttgctaaaatg
cgcacaacatctgttagaaagttacttcccgagtcctggggtttcctttgtccagttcat
acacctgatggagagccttgtggtttattgaaccatatgacttccacatgccgtatttca
tcgttctacaattcagaaggggcggttaaagattttgagaaaataaagaagtcactttct
gctgagttggttcgtgttggaatgaacccagtgtttcctaagattgaacgatctggtccc
ccagaagtactacatgtacatttggatggatgtattcttggtaccgtgccttctgctagg
attgaggaagtagttaattttcttcggaagttgaaacttctggcacactctgggattcct
gaagatctggaagttggctatgttcctcttagtctttgtggagcttatcctggcctttac
ctttttacaaatccagcaagatttgttcgacctgtcaaaaatctgttaagtgtacctggt
ggaaagcaaagtattgagcttattggaccatttgaacaggcatttatggagatacggtgt
cctgatggtggggatggagggagaaaaaaaatgtttcctgcaactcatgaagaaatccac
cctaccgctattcttagtgtggttgccaatctgacaccctggtctgatcacaaccaaagt
cctaggaacatgtaccaatgccagatggcgaagcaaaccatgggtttttgtggacaagct
ctaaaattccgtactgatgtaaaagcattccacctacagacccctcagacaccaattgtt
cggacagctacatatagtaaatattgtatggatgaatttccatcaggaacaaatgctatt
gttgcagtgctagcatacacaggttatgacatggaggatgccatgatactgaataaatca
gctgttgatcgtggaatgttccgtggacatatttaccagaccgaatgcattgacttatcc
aagaaaaacagagaaaatgttccagaaatatttgcaaagagtgtcttatctagggataca
aacactgctattgattcagatggccttcctcggcttggacaggtagttatctgttcattc
tatattaaaagttatttccttgtgcaagaacagttattgaattccttttacatgtatttt
catggacagacagtacatccaaatgagcagtactatagtgtctataacagactgacaggt
gcgataaggcctgtcaaactaaaaggctcggagccagcgtatattgactatgttgctgtc
aatggggcaagttcaaaaggtgactttcagaaggcgaacattcgtttgcgtcgtgtaaga
aaccccataattggtgacaagttcagcagcagacatgggcaaaagggtgtttgctctcag
ttgtggcctgacattgacatgccattctctgcaaatactggcatgaggccagatcttatc
attaaccctcatgcatttccttcaagaatgactattgcaatgcttttagagtctatggca
gcaaaggctggaagtctgcatggaaagttcattgatgccacacctttttcaagctctgtc
aaagaggagggcaaggattcccataatcctgattcgattgtgaatgaactgggtcccatg
ctcgcatcttatgggtttgattatcatggaacagagatcctttatagtggattttttggc
actgagatggagtgtgtgattttcattggacctgtttattaccagcgtcttaggcatatg
gtctcagataaattccaggtccgcacaactggtcgtatagaccaggtgacaaaacaaccc
attggaggaaggaagcatggcggagggatccggtttggtgagatggagcgcgatgcgctc
ctcgcccatgggtcttcctacctcttgcacgacaggctccactcctgctcggactaccac
atcgcggatgtgtgctccttctgcgggagcctactgaccgcgacagtgatcaaatccgat
acgcagaagaaagccaagcgcgagatgcttggggtatccacggtgaggccggcaaaaaac
ttatcgtgccatgcctgcaaaacgagcaaggggatggagaccgtggcgatgccgtacgtg
ttcaggtacctggccgccgagctggccgccatgaacataaagctggagctccggctgagc
aacaaatcagaattgcctcccagccaaggatcatga
DBGET
integrated database retrieval system
